| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 27 [0] | [0] 27 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 27 (1.010) | 23/96 | 0.1 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > NC_000913/2336584‑2336677 | tgatggcaatcctgatggtcattgtcccaacgcttactattggttatatt > 1:1162845‑M2/50‑50 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac > 1:1801298‑M2/45‑49 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca > 1:1238886‑M2/44‑50 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca > 1:2185805‑M2/44‑50 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAt < 1:622902‑M2/12‑1 (MQ=255) tgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt > 1:2187992‑M2/38‑50 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt < 1:1429113‑M2/13‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc > 1:1999062‑M2/36‑50 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcac < 1:640645‑M2/18‑1 (MQ=255) tcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcaca > 1:396541‑M2/32‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt > 1:1760663‑M2/30‑50 (MQ=255) tcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCtt < 1:1829262‑M2/25‑1 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg > 1:913359‑M2/22‑49 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:1143931‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:183157‑M2/20‑49 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCAAATTCCTTGTGtat < 1:1909645‑M2/31‑1 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 1:1969082‑M2/18‑50 (MQ=255) tactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:2036934‑M2/16‑49 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:2186722‑M2/15‑48 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:716375‑M2/15‑48 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccag > 1:2136529‑M2/14‑50 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc < 1:826000‑M2/38‑1 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc < 1:940464‑M2/38‑1 (MQ=255) tggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAt > 1:354591‑M2/10‑50 (MQ=255) ggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAt < 1:1848886‑M2/41‑1 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt > 1:1194436‑M2/6‑50 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt < 1:1547840‑M2/45‑1 (MQ=255) | TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > NC_000913/2336584‑2336677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |