New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 380111	0 (0.000)	20 (0.950) +CGAGATGGACG	17/76	0.1	63.4%	coding (732/774 nt)	yaiO	outer membrane protein YaiO
	?	NC_000913	624576 =	30 (1.090)					intergenic (‑66/‑309)	fepB/entC	ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC

ATTAATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAG  >  NC_000913/624527‑624623                                                  |                                                atttccaggtcagacgggctgcaagttgcagaccgttacgagatggacgg                                                 >  1:1512139‑M2/50‑50 (MQ=255)  ttaATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGt                                                <  1:551335/50‑1 (MQ=255)  ttaATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGt                                                <  1:76587/50‑1 (MQ=255)   taataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTc                                               >  1:18831/1‑50 (MQ=255)   taataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTc                                               >  1:618504/1‑50 (MQ=255)    tccaggtcagacgggctgcaagttgcagaccgttacgagatggacgGTcc                                              >  1:1713311‑M2/47‑50 (MQ=255)    aataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTcc                                              >  1:1271951/1‑50 (MQ=255)     ataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTccc                                             >  1:88351/1‑50 (MQ=255)      caggtcagacgggctgcaagttgcagaccgttacgagatggacgGTcccc                                            <  1:2329682‑M2/6‑1 (MQ=255)      caggtcagacgggctgcaagttgcagaccgttacgagatggacgGTccc                                             <  1:1334832‑M2/5‑1 (MQ=255)       aggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCt                                           >  1:269085‑M2/44‑50 (MQ=255)       aaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCt                                           >  1:95329/1‑50 (MQ=255)        ggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTc                                          <  1:603963‑M2/8‑1 (MQ=255)        aGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCt                                           <  1:2042621/49‑1 (MQ=255)        aGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTc                                          >  1:1904341/1‑50 (MQ=255)            agacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGccc                                      <  1:533001‑M2/12‑1 (MQ=255)             aaGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGcccc                                     >  1:2245391/1‑50 (MQ=255)              aGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGcccc                                     <  1:723372/49‑1 (MQ=255)              aGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCt                                    >  1:2181376/1‑50 (MQ=255)              aGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCt                                    <  1:209326/50‑1 (MQ=255)               gggCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCtt                                   >  1:1041964/1‑50 (MQ=255)               gggCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCtt                                   >  1:1313026/1‑50 (MQ=255)                gggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCctt                                  <  1:774621‑M2/16‑1 (MQ=255)                gggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCctt                                  >  1:396766‑M2/35‑50 (MQ=255)                gggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCctt                                  <  1:1797286‑M2/16‑1 (MQ=255)                ggCGTAATGACAAATTCGACAAAGCGCACAATCTGTCCCCTCGCCCCttt                                  <  1:1557896/50‑1 (MQ=255)                 ggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTg                                 >  1:1194805‑M2/34‑50 (MQ=255)                    tgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTggg                               >  1:619021‑M2/31‑49 (MQ=255)                      caagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTggg                               >  1:2338924‑M2/29‑47 (MQ=255)                      aTGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGgag                            <  1:611387/50‑1 (MQ=255)                       tGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGga                             >  1:1978066/1‑48 (MQ=255)                         aCAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAgg                         >  1:172915/1‑50 (MQ=255)                           tgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGt                       >  1:174048‑M2/24‑50 (MQ=255)                           aaaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt                       >  1:988089/1‑50 (MQ=255)                           aaaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt                       >  1:1015833/1‑50 (MQ=255)                             aTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt                       >  1:604917/1‑48 (MQ=255)                             aTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt                       >  1:1126601/1‑48 (MQ=255)                              agaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAg                    >  1:222185‑M2/21‑50 (MQ=255)                                accgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAggg                  <  1:1806552‑M2/32‑1 (MQ=255)                                 gACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt                 <  1:139991/50‑1 (MQ=255)                                 ccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt                 <  1:89375‑M2/33‑1 (MQ=255)                                  cgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt                 >  1:2200908‑M2/17‑49 (MQ=255)                                  cgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTg                <  1:2059308‑M2/34‑1 (MQ=255)                                    aaaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAg              >  1:345902/1‑50 (MQ=255)                                     tacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAgg             >  1:165572‑M2/14‑50 (MQ=255)                                           acaATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGaa         >  1:1666028/1‑48 (MQ=255)                                                ccGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAcagccag  >  1:2150411/1‑50 (MQ=255)                                                ccGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAcagccag  >  1:644796/1‑50 (MQ=255)                                                 cGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAcagccag  >  1:684250/1‑49 (MQ=255)                                                 cGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAcagccag  >  1:909137/1‑49 (MQ=255)                                                  |                                                ATTAATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAG  >  NC_000913/624527‑624623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.