Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,627,518 Δ25,244 bp [ydfG]–[ynfP] 48 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1627518 1652761 25244 36 [0] [0] 38 [ydfG]–[ynfP] [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16275170 (0.000)36 (1.340) 26/96 0.0 100% coding (1/747 nt) ydfG 3‑hydroxy acid dehydrogenase
?NC_000913 1652762 = 0 (0.000)coding (77/111 nt) ynfP protein YnfP

CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCAT  >  NC_000913/1627469‑1627563
                                                |                                              
cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa                                               <  1:1165501‑M1/50‑2 (MQ=255)
cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa                                               <  1:936139‑M1/50‑2 (MQ=255)
cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa                                               <  1:2141706‑M1/50‑2 (MQ=255)
 aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag                                              >  1:430369‑M1/1‑48 (MQ=255)
 aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag                                              >  1:1819739‑M1/1‑48 (MQ=255)
    ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg                                            <  1:797776‑M1/49‑5 (MQ=255)
     cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg                                            >  1:1130345‑M1/1‑44 (MQ=255)
       tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt                                        <  1:581960‑M1/50‑9 (MQ=255)
       tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt                                        >  1:2083506‑M1/1‑42 (MQ=255)
        gCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg                                       >  1:1027345‑M1/1‑41 (MQ=255)
          tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc                                     >  1:1385418‑M1/1‑39 (MQ=255)
           aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc                                     >  1:555273‑M1/1‑38 (MQ=255)
            tGTTATTGACACACAAAAGCGTTGAGGGACAGTGAGAagcgcagtgcc                                     <  1:1483226‑M1/48‑12 (MQ=255)
            tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccca                                   <  1:1229801‑M1/50‑14 (MQ=255)
             gTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag                                  >  1:2024630‑M1/1‑36 (MQ=255)
                aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca                               >  1:1468810‑M1/1‑33 (MQ=255)
                 ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca                               <  1:834081‑M1/49‑18 (MQ=255)
                     cacacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccg                          <  1:1984509‑M1/50‑23 (MQ=255)
                     cacacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccg                          <  1:1686608‑M1/50‑23 (MQ=255)
                     cacacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccg                          <  1:239769‑M1/50‑23 (MQ=255)
                           aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg                    >  1:286825‑M1/1‑22 (MQ=255)
                           aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg                    >  1:335813‑M1/1‑22 (MQ=255)
                             aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct                  <  1:15416‑M1/50‑31 (MQ=255)
                             aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct                  <  1:866251‑M1/50‑31 (MQ=255)
                              gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg                 <  1:1350051‑M1/50‑32 (MQ=255)
                               cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc                <  1:786821‑M1/50‑33 (MQ=255)
                                gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct               >  1:1939418‑M1/1‑17 (MQ=255)
                                gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct               <  1:1482852‑M1/50‑34 (MQ=255)
                                gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct               >  1:526781‑M1/1‑17 (MQ=255)
                                    aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca           >  1:1323051‑M1/1‑13 (MQ=255)
                                    aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttc            <  1:462667‑M1/49‑37 (MQ=255)
                                      gAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc         <  1:1415045‑M1/50‑40 (MQ=255)
                                       aaCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca        <  1:980191‑M1/50‑41 (MQ=255)
                                             gagaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct  >  1:1332277‑M1/1‑4 (MQ=255)
                                             gagaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct  >  1:1826273‑M1/1‑4 (MQ=255)
                                             gagaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct  >  1:943118‑M1/1‑4 (MQ=255)
                                                |                                              
CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCAT  >  NC_000913/1627469‑1627563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑