| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 36 [0] | [0] 38 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 36 (1.340) | 26/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
ATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGT > NC_000913/1652713‑1652811 | catcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaa < 1:1165501‑M2/1‑1 (MQ=255)catcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaa < 1:936139‑M2/1‑1 (MQ=255)catcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaa < 1:2141706‑M2/1‑1 (MQ=255) atcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAg > 1:1819739‑M2/49‑50 (MQ=255) atcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAg > 1:430369‑M2/49‑50 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg < 1:797776‑M2/4‑1 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:1130345‑M2/45‑48 (MQ=255) tgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGt > 1:2083506‑M2/43‑50 (MQ=255) tgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGt < 1:581960‑M2/8‑1 (MQ=255) gctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTg > 1:1027345‑M2/42‑50 (MQ=255) tatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:1385418‑M2/40‑50 (MQ=255) atgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:555273‑M2/39‑49 (MQ=255) tgttattgacacacaaaagcgttgagggacagtgagaAGCGCAGTGcc < 1:1483226‑M2/11‑1 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCa < 1:1229801‑M2/13‑1 (MQ=255) gttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAg > 1:2024630‑M2/37‑50 (MQ=255) attgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCa > 1:1468810‑M2/34‑50 (MQ=255) ttgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCa < 1:834081‑M2/17‑1 (MQ=255) cacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCg < 1:239769‑M2/22‑1 (MQ=255) cacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCg < 1:1984509‑M2/22‑1 (MQ=255) cacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCg < 1:1686608‑M2/22‑1 (MQ=255) aaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActg > 1:286825‑M2/23‑50 (MQ=255) aaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActg > 1:335813‑M2/23‑50 (MQ=255) agcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct < 1:866251‑M2/30‑1 (MQ=255) agcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct < 1:15416‑M2/30‑1 (MQ=255) gcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgctg < 1:1350051‑M2/31‑1 (MQ=255) cgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACtgctgc < 1:786821‑M2/32‑1 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:1939418‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:526781‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct < 1:1482852‑M2/33‑1 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTc < 1:462667‑M2/36‑1 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCa > 1:1323051‑M2/14‑50 (MQ=255) gaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAcc < 1:1415045‑M2/39‑1 (MQ=255) aacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCa < 1:980191‑M2/40‑1 (MQ=255) gagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCt > 1:1332277‑M2/5‑50 (MQ=255) gagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCt > 1:1826273‑M2/5‑50 (MQ=255) gagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCt > 1:943118‑M2/5‑50 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt < 1:1742063/50‑1 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt < 1:1842822/50‑1 (MQ=255) | ATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGT > NC_000913/1652713‑1652811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |