| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 213730 | 30 (0.990) | 63 (2.860) +AGGACTTCTTGAA |
3/70 | 2.3 | 71.6% | coding (203/255 nt) | rof | modulator of Rho‑dependent transcription termination |
| ? | NC_000913 | 3958648 = | 39 (1.280) | coding (679/1476 nt) | ilvC | ketol‑acid reductoisomerase (NADP(+)) | |||||
GGTGGCTAAAGCTGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/213713‑213730‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTATGTTGCAGGCTGGCTCTCT > NC_000913/3958648‑3958670 ||||||||||||| taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1054988/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:701111/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:66550/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1851556/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1768681/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:2089215/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:214036/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1740966/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:255389/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1666031/3‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:1819294/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:2188656/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:1653859/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:1398185/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:474172/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:639116/2‑48 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:242508/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:245020/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:253631/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:572575/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:577959/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:580791/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:992605/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:1451556/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:111862/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:1779017/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:267119/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:1290615/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:1238903/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:763274/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:987270/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:679205/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:2074771/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:949158/47‑1 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:855910/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:756348/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:2239627/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:932322/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:1185105/1‑49 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:776310/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:337666/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:1066020/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:1456906/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:1750655/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:1722469/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:2194274/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:1610260/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:566770/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:2041477/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:2048419/48‑1 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:1921388/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1754792/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:210299/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:81245/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:708550/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1088253/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:2250849/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1094135/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:2252224/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:589137/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:2324832/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:123643/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:1622544/49‑3 ||||||||||||| GGTGGCTAAAGCTGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/213713‑213730‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTATGTTGCAGGCTGGCTCTCT > NC_000913/3958648‑3958670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |