| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 213730 | 30 (0.990) | 63 (2.860) +AGGACTTCTTGAA |
3/70 | 2.3 | 71.6% | coding (203/255 nt) | rof | modulator of Rho‑dependent transcription termination |
| ? | NC_000913 | 3958648 = | 39 (1.280) | coding (679/1476 nt) | ilvC | ketol‑acid reductoisomerase (NADP(+)) | |||||
GATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCGACGAC > NC_000913/213682‑213776 | gATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTaa > 1:942762/1‑49 (MQ=255) aTTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt < 1:2002286/49‑1 (MQ=255) gCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTa > 1:589333/1‑49 (MQ=255) tACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGCAATTTTATc > 1:306322/1‑48 (MQ=255) accaccaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATcc < 1:1643324/48‑1 (MQ=255) accaccaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATc < 1:1683451/47‑1 (MQ=255) ccaccaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAg < 1:856820/49‑1 (MQ=255) ccaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACg > 1:900696/1‑49 (MQ=255) accGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCa < 1:2333828/49‑1 (MQ=255) accGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCa < 1:869351/49‑1 (MQ=255) gTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCt < 1:1932250/49‑1 (MQ=255) gTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCt < 1:675592/49‑1 (MQ=255) ccGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTcgc < 1:1239391/49‑1 (MQ=255) ttCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGtt > 1:1730582/1‑49 (MQ=255) tCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGttt > 1:1753835/1‑49 (MQ=255) gggTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGc < 1:1516539/49‑1 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:66550‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1851556‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:214036‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1768681‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1666031‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:255389‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1054988‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:2089215‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1740966‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:701111‑M1/3‑18 (MQ=255) gTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCa < 1:744830/49‑1 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:1819294‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:639116‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:1653859‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:2188656‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:474172‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:1398185‑M1/2‑17 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:577959‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:572575‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:580791‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:1451556‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:242508‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:111862‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:245020‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:253631‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:992605‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:267119‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:1779017‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:763274‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:987270‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:1290615‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:1238903‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:2074771‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:679205‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:949158‑M1/47‑32 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:756348‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:2239627‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:855910‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:1185105‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:932322‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGc > 1:677309/1‑49 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:337666‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:776310‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:2194274‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:1456906‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:1066020‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:1722469‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:1750655‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:566770‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:1610260‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:2048419‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:2041477‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGc < 1:2277325/48‑1 (MQ=255) gCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGc < 1:82764/48‑1 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:1921388‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:81245‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:1622544‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:123643‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1094135‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:708550‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1754792‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1088253‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:589137‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:210299‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:2250849‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:2252224‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:2324832‑M1/1‑13 (MQ=255) cTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCgg > 1:1063168/1‑49 (MQ=255) tAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGc > 1:1722792/1‑49 (MQ=255) aaaGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGcc > 1:1340217/1‑49 (MQ=255) aaaGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGcc > 1:721565/1‑49 (MQ=255) aaaGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGcc > 1:2067904/1‑49 (MQ=255) aaGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGc < 1:920763/47‑1 (MQ=255) aaGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCt > 1:1065235/1‑49 (MQ=255) aGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTc < 1:2099759/49‑1 (MQ=255) cTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcga > 1:990984/1‑49 (MQ=255) tAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCgacgac > 1:1429782/1‑49 (MQ=255) aaTTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCgacgac > 1:240274/1‑48 (MQ=255) | GATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCGACGAC > NC_000913/213682‑213776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |