| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 213730 | 30 (0.990) | 63 (2.860) +AGGACTTCTTGAA |
3/70 | 2.3 | 71.6% | coding (203/255 nt) | rof | modulator of Rho‑dependent transcription termination |
| ? | NC_000913 | 3958648 = | 39 (1.280) | coding (679/1476 nt) | ilvC | ketol‑acid reductoisomerase (NADP(+)) | |||||
Only 100 of 104 total aligned reads displayed.
GTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGGAAG > NC_000913/3958600‑3958696 | gTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCg > 1:948188/1‑49 (MQ=255)gTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCg > 1:256011/1‑49 (MQ=255) tGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCgg > 1:1802194/1‑48 (MQ=255) gCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGt < 1:568705/48‑1 (MQ=255) cGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTa < 1:332566/48‑1 (MQ=255) cGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTAt > 1:1029953/1‑49 (MQ=255) cGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTAt < 1:1094765/49‑1 (MQ=255) ggAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATg < 1:2063699/49‑1 (MQ=255) ggAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATg > 1:873788/1‑49 (MQ=255) gAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGt < 1:564663/49‑1 (MQ=255) aaGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGtt < 1:402995/49‑1 (MQ=255) aGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTg > 1:1608111/1‑49 (MQ=255) aGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTg < 1:923418/49‑1 (MQ=255) aaTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggc < 1:1652576/49‑1 (MQ=255) aTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggct > 1:239606/1‑49 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:701111‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1740966‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:255389‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1768681‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:214036‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:66550‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:2089215‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1054988‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1851556‑M2/32‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:1819294‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:474172‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:1653859‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:639116‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:1398185‑M2/31‑48 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:111862‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac < 1:242508‑M2/20‑3 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:245020‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:253631‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac < 1:580791‑M2/20‑3 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac < 1:1451556‑M2/20‑3 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:572575‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:577959‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:267119‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:763274‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:987270‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:1290615‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:1238903‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:1779017‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc < 1:949158‑M2/18‑1 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc < 1:2074771‑M2/18‑1 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc < 1:679205‑M2/18‑1 (MQ=255) aCCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctc > 1:298063/1‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:932322‑M2/29‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:855910‑M2/29‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:1185105‑M2/29‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:756348‑M2/29‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:2239627‑M2/29‑49 (MQ=255) ccTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctct < 1:260895/49‑1 (MQ=255) ccTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctct > 1:1029333/1‑49 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt < 1:2194274‑M2/22‑2 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:776310‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:1066020‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:1456906‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:1750655‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:1722469‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt < 1:337666‑M2/22‑2 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:1610260‑M2/21‑1 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:2041477‑M2/21‑1 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:2048419‑M2/21‑1 (MQ=255) cTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctctc > 1:15938/1‑49 (MQ=255) cTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctctc > 1:152638/1‑49 (MQ=255) cTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctctc > 1:630411/1‑49 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:2252224‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:1921388‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:1088253‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:1094135‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:210299‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:81245‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:708550‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:2250849‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:123643‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:589137‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:1622544‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:2324832‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:1754792‑M2/27‑47 (MQ=255) aTGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTctgc > 1:2156402/1‑49 (MQ=255) gggCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTctgctg > 1:1273818/1‑49 (MQ=255) gAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCt > 1:2361037/1‑49 (MQ=255) gAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCt > 1:1827134/1‑49 (MQ=255) aGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCtt < 1:1850084/49‑1 (MQ=255) aaaCCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGa > 1:1687392/1‑49 (MQ=255) aCCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGAc > 1:942112/1‑48 (MQ=255) ccATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGAc > 1:1694157/1‑47 (MQ=255) ccATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACaa < 1:1681216/49‑1 (MQ=255) aTCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGc > 1:1434686/1‑49 (MQ=255) tCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCt < 1:433258/49‑1 (MQ=255) cTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtgg < 1:2199144/49‑1 (MQ=255) cTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtgg < 1:742872/49‑1 (MQ=255) cTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtg < 1:167639/48‑1 (MQ=255) tgCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtggt < 1:2130070/47‑1 (MQ=255) gCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtggtgg > 1:375239/1‑48 (MQ=255) cGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGgaa < 1:495860/49‑1 (MQ=255) cGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGga < 1:1227017/48‑1 (MQ=255) ggTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGgaag < 1:692130/49‑1 (MQ=255) ggTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGgaag < 1:47889/49‑1 (MQ=255) | GTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGGAAG > NC_000913/3958600‑3958696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |