New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3801110 (0.000)11 (0.410)
+CGAGAT		 10/84 0.9 40.5% coding (732/774 nt) yaiO outer membrane protein YaiO
?NC_000913 4070444 = 37 (1.220)intergenic (‑43/+71) yihR/yihS putative aldose 1‑epimerase YihR/sulfoquinovose isomerase

AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/380064‑380111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGG  >  NC_000913/4070444‑4070479
                                                ||||||                                    
AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC                                           >  1:512182/1‑49
   AATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAG                                        <  1:2331555/49‑1
        GAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA                                   >  1:202778/1‑49
          ATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG                                 <  1:1028474/49‑1
               CAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCC                            >  1:1947580/1‑49
               CAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCC                            <  1:437464/49‑1
                   TCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCG                        >  1:2251460/1‑49
                          GGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTT                 >  1:305736/1‑49
                          GGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTT                 >  1:752089/1‑49
                            CTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGG               >  1:444940/1‑49
                                AAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG              >  1:395756/1‑46
                                       AGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTA    <  1:7476/49‑1
                                         ACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGG  >  1:646038/1‑49
                                                ||||||                                    
AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/380064‑380111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGG  >  NC_000913/4070444‑4070479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.