| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 11 (0.410) +CGAGAT |
10/84 | 0.9 | 40.5% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 37 (1.220) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
CGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAC > NC_000913/4070396‑4070492 | cGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCg > 1:2264827/1‑49 (MQ=255) gACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCg > 1:961797/1‑48 (MQ=255) gACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCg > 1:16374/1‑48 (MQ=255) gaatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGa > 1:202778‑M2/47‑49 (MQ=255) cATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc < 1:347471/49‑1 (MQ=255) atttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACg < 1:1028474‑M2/5‑1 (MQ=255) tACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACgg < 1:1224168/49‑1 (MQ=255) tACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACgg > 1:513490/1‑49 (MQ=255) aCAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGt > 1:1371871/1‑49 (MQ=255) cAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTc > 1:326605/1‑49 (MQ=255) aGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTcc < 1:1910114/49‑1 (MQ=255) gCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTccc < 1:2201677/49‑1 (MQ=255) caggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTccc < 1:437464‑M2/10‑1 (MQ=255) caggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTccc > 1:1947580‑M2/40‑49 (MQ=255) ccTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTcccc < 1:2252502/49‑1 (MQ=255) ccTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTcccc < 1:1902385/49‑1 (MQ=255) ccTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTcccc < 1:746288/49‑1 (MQ=255) tcagacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCg > 1:2251460‑M2/36‑49 (MQ=255) cccGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCg > 1:267173/1‑49 (MQ=255) ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc < 1:1692418/47‑1 (MQ=255) ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc < 1:1952500/47‑1 (MQ=255) ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc < 1:948037/47‑1 (MQ=255) gTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGccc < 1:2217575/49‑1 (MQ=255) ggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCctt > 1:752089‑M2/29‑49 (MQ=255) ggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCctt > 1:305736‑M2/29‑49 (MQ=255) ggCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCttt < 1:1665630/49‑1 (MQ=255) ggCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCttt < 1:1583278/49‑1 (MQ=255) gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTg > 1:2055414/1‑49 (MQ=255) ctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTgg > 1:444940‑M2/27‑49 (MQ=255) cTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgg > 1:178732/1‑49 (MQ=255) tGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:612038/1‑49 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgggg < 1:467252/48‑1 (MQ=255) aagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTggg > 1:395756‑M2/23‑46 (MQ=255) tCAAACCCAAAAACTGCACCGGACTGTCCCCTCGCCCCTTTGGGGagag < 1:1739902/49‑1 (MQ=255) tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGgaga < 1:790571/48‑1 (MQ=255) aaaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAgg < 1:465889/48‑1 (MQ=255) aaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGt > 1:1342643/1‑49 (MQ=255) agaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTa < 1:7476‑M2/34‑1 (MQ=255) ccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAg > 1:1597633/1‑49 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg < 1:132307/49‑1 (MQ=255) accgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAgg > 1:646038‑M2/14‑49 (MQ=255) cTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgg < 1:946495/49‑1 (MQ=255) gCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAggg > 1:116668/1‑48 (MQ=255) gCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAggg > 1:2006186/1‑48 (MQ=255) gCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAggg > 1:874078/1‑48 (MQ=255) cACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAggg < 1:2207901/47‑1 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaa < 1:1208701/49‑1 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGa > 1:1527131/1‑48 (MQ=255) ggACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAc < 1:683405/49‑1 (MQ=255) | CGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAC > NC_000913/4070396‑4070492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |