| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 213730 | 26 (0.700) | 71 (2.650) +AGGACTTCTTGAA |
3/70 | 2.3 | 73.4% | coding (203/255 nt) | rof | modulator of Rho‑dependent transcription termination |
| ? | NC_000913 | 3958648 = | 45 (1.220) | coding (679/1476 nt) | ilvC | ketol‑acid reductoisomerase (NADP(+)) | |||||
GGTGGCTAAAGCTGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/213713‑213730‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTATGTTGCAGGCTGGCTCTCT > NC_000913/3958648‑3958670 ||||||||||||| taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:327971/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:26170/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1204048/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:350149/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:2455521/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1912750/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1330757/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:764328/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:801342/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGGACGTTGCAGGCTGG > 1:1843553/3‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:32499/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:2683995/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:1852970/2‑48 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:1608732/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:327005/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:264908/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:569383/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:757789/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:773124/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:810939/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:1949008/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:960310/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:690020/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:632879/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:1192671/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:775834/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:1202090/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:1212091/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:2605535/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:945226/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:2723356/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:524384/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:76313/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:1262003/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:1872476/47‑1 GGCTAAAGCTGGTAAAGGACTTCTTGAATGTACGTTGCAGGCTGGCACT > 1:2553435/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:1374524/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:1729075/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:2404051/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:1381874/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:851057/1‑49 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:446186/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:498691/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:1185070/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:294748/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:1494131/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:1991539/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:2007996/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:2185972/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:2800566/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:2866502/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:2595695/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:323728/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:861395/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:833801/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:1983800/48‑1 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:123127/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:905283/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:1373079/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1470172/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:1073509/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:1839111/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:1873457/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1911698/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1923911/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:726846/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:681244/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:675772/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:2120901/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:260702/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:2612943/1‑47 ||||||||||||| GGTGGCTAAAGCTGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/213713‑213730‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTATGTTGCAGGCTGGCTCTCT > NC_000913/3958648‑3958670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |