| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 213730 | 26 (0.700) | 71 (2.650) +AGGACTTCTTGAA |
3/70 | 2.3 | 73.4% | coding (203/255 nt) | rof | modulator of Rho‑dependent transcription termination |
| ? | NC_000913 | 3958648 = | 45 (1.220) | coding (679/1476 nt) | ilvC | ketol‑acid reductoisomerase (NADP(+)) | |||||
GATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCGACGACC > NC_000913/213682‑213777 | gATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTaa > 1:1714659/1‑49 (MQ=255) aTTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt > 1:387839/1‑49 (MQ=255) aTTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt < 1:1837798/49‑1 (MQ=255) caccaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGa < 1:2644755/49‑1 (MQ=255) caccaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGa < 1:1862005/49‑1 (MQ=255) accaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGAc < 1:2267414/49‑1 (MQ=255) accaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGAc < 1:619645/49‑1 (MQ=255) ccaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACg > 1:871793/1‑49 (MQ=255) ccaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACg < 1:2115247/49‑1 (MQ=255) cGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGc < 1:642832/49‑1 (MQ=255) cGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTc < 1:1873102/48‑1 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:26170‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1912750‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:350149‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:327971‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:2455521‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:764328‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1204048‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:801342‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1330757‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaagggacgttgcaggctgg > 1:1843553‑M1/3‑18 (MQ=255) gTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCa < 1:2669103/49‑1 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:32499‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:2683995‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:1852970‑M1/2‑17 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:757789‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:264908‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:569383‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:773124‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:1608732‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:327005‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:1949008‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:960310‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:632879‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:690020‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:810939‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:1192671‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:524384‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:1872476‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:76313‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:775834‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:2723356‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:1262003‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:1212091‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:1202090‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:945226‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:2605535‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAg < 1:347407/49‑1 (MQ=255) tGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAg > 1:1095074/1‑49 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaatgtacgttgcaggctggcact > 1:2553435‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:1374524‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:851057‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:1381874‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:2404051‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:1729075‑M1/1‑15 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:2185972‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:1185070‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:2800566‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:2866502‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:294748‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:498691‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:2007996‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:1991539‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:446186‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:1494131‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:1983800‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:833801‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:323728‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:861395‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:2595695‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGc < 1:1832310/48‑1 (MQ=255) gCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGc < 1:767665/48‑1 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:123127‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:1373079‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:1073509‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:905283‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1470172‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:726846‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:260702‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1911698‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:2612943‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:2120901‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1923911‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:681244‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:1873457‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:1839111‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:675772‑M1/49‑37 (MQ=255) cTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCgg < 1:1979280/49‑1 (MQ=255) gCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcg < 1:150807/49‑1 (MQ=255) gCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcg < 1:739941/49‑1 (MQ=255) cTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcga < 1:337673/49‑1 (MQ=255) cTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcga > 1:2798175/1‑49 (MQ=255) cTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcga > 1:1099992/1‑49 (MQ=255) gTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcgacg < 1:1453344/48‑1 (MQ=255) gTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcgac < 1:852073/47‑1 (MQ=255) gTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcgac < 1:679197/47‑1 (MQ=255) tAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCgacgac > 1:1491027/1‑49 (MQ=255) aTTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCGACGAcc < 1:2147881/48‑1 (MQ=255) | GATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCGACGACC > NC_000913/213682‑213777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |