BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 213730	26 (0.700)	71 (2.650) +AGGACTTCTTGAA	3/70	2.3	73.4%	coding (203/255 nt)	rof	modulator of Rho‑dependent transcription termination
*	?	NC_000913	3958648 =	45 (1.220)	71 (2.650) +AGGACTTCTTGAA	3/70	2.3	73.4%	coding (679/1476 nt)	ilvC	ketol‑acid reductoisomerase (NADP(+))

Only 100 of 118 total aligned reads displayed.

TTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGGAAG  >  NC_000913/3958601‑3958696

ttGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCgg                                                 >  1:2003546/1‑49 (MQ=255)

  gCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTa                                               >  1:2414923/1‑49 (MQ=255)

    ggAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATg                                             <  1:1863314/49‑1 (MQ=255)

    ggAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATg                                             >  1:64614/1‑49 (MQ=255)

        gTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTg                                          >  1:1099680/1‑48 (MQ=255)

         tGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCa                                        <  1:2244585/49‑1 (MQ=255)

           aaaTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAg                                       <  1:357423/48‑1 (MQ=255)

           aaaTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAg                                       <  1:231446/48‑1 (MQ=255)

             aTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggct                                    <  1:2629488/49‑1 (MQ=255)

             aTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggct                                    >  1:1621887/1‑49 (MQ=255)

             aTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggct                                    >  1:2106006/1‑49 (MQ=255)

               cTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggctgg                                  >  1:2799734/1‑49 (MQ=255)

                tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg                                  >  1:2455521‑M2/32‑48 (MQ=255)

                tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg                                  >  1:1330757‑M2/32‑48 (MQ=255)

                tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg                                  >  1:801342‑M2/32‑48 (MQ=255)

                tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg                                  >  1:1204048‑M2/32‑48 (MQ=255)

                tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg                                  >  1:764328‑M2/32‑48 (MQ=255)

                tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg                                  >  1:327971‑M2/32‑48 (MQ=255)

                tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg                                  >  1:350149‑M2/32‑48 (MQ=255)

                tatggctaaagctggtaaaggacttcttgaaGGGACGTTGCAggctgg                                  >  1:1843553‑M2/32‑48 (MQ=255)

                tGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggctggc                                 >  1:706023/1‑49 (MQ=255)

                 gACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggctggct                                >  1:1216656/1‑49 (MQ=255)

                 gACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggctggct                                >  1:2596251/1‑49 (MQ=255)

                 atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca                                >  1:1852970‑M2/31‑48 (MQ=255)

                 atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca                                >  1:32499‑M2/31‑48 (MQ=255)

                 atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca                                >  1:2683995‑M2/31‑48 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac                               >  1:327005‑M2/30‑47 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac                               <  1:773124‑M2/20‑3 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac                               <  1:264908‑M2/20‑3 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac                               <  1:757789‑M2/20‑3 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac                               >  1:569383‑M2/30‑47 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca                                <  1:690020‑M2/19‑2 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca                                <  1:1192671‑M2/19‑2 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca                                <  1:1949008‑M2/19‑2 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca                                <  1:960310‑M2/19‑2 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca                                <  1:632879‑M2/19‑2 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca                                <  1:810939‑M2/19‑2 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc                                 <  1:1872476‑M2/18‑1 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc                                 <  1:1202090‑M2/18‑1 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc                                 <  1:2605535‑M2/18‑1 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc                                 <  1:1212091‑M2/18‑1 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc                                 <  1:1262003‑M2/18‑1 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc                                 <  1:76313‑M2/18‑1 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc                                 <  1:524384‑M2/18‑1 (MQ=255)

                  tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc                                 <  1:945226‑M2/18‑1 (MQ=255)

                  aCCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctc                               >  1:888966/1‑49 (MQ=255)

                   ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact                              >  1:1381874‑M2/29‑49 (MQ=255)

                   ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact                              >  1:851057‑M2/29‑49 (MQ=255)

                   ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact                              >  1:1374524‑M2/29‑49 (MQ=255)

                   ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact                              >  1:2404051‑M2/29‑49 (MQ=255)

                   ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact                              >  1:1729075‑M2/29‑49 (MQ=255)

                   ccTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctct                              >  1:906225/1‑49 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt                             <  1:2800566‑M2/22‑2 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt                             <  1:498691‑M2/22‑2 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt                             >  1:2866502‑M2/28‑48 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt                             >  1:294748‑M2/28‑48 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt                             <  1:446186‑M2/22‑2 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt                             >  1:2185972‑M2/28‑48 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt                             <  1:1185070‑M2/22‑2 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt                             <  1:1991539‑M2/22‑2 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt                             >  1:1494131‑M2/28‑48 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact                              <  1:2595695‑M2/21‑1 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact                              <  1:833801‑M2/21‑1 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact                              <  1:1983800‑M2/21‑1 (MQ=255)

                    gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact                              <  1:861395‑M2/21‑1 (MQ=255)

                    cTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctctc                             <  1:1416208/49‑1 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            <  1:1073509‑M2/23‑3 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            >  1:2612943‑M2/27‑47 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            <  1:681244‑M2/23‑3 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            <  1:675772‑M2/23‑3 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            >  1:123127‑M2/27‑47 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            <  1:1373079‑M2/23‑3 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            >  1:1470172‑M2/27‑47 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            >  1:905283‑M2/27‑47 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            <  1:1839111‑M2/23‑3 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            <  1:1873457‑M2/23‑3 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            >  1:1911698‑M2/27‑47 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            >  1:1923911‑M2/27‑47 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            <  1:2120901‑M2/23‑3 (MQ=255)

                     ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc                            >  1:260702‑M2/27‑47 (MQ=255)

                      gATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTctg                           >  1:1220767/1‑49 (MQ=255)

                       aTGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctctcttc                          >  1:2556097/1‑47 (MQ=255)

                       aTGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctctct                            <  1:1536058/47‑1 (MQ=255)

                       aTGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTctgc                          >  1:1705693/1‑49 (MQ=255)

                        tGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTctgct                         >  1:684341/1‑49 (MQ=255)

                          ggCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCtgt                       >  1:1602765/1‑49 (MQ=255)

                           gCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCtgtg                      <  1:319024/49‑1 (MQ=255)

                               gCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTc                  <  1:147415/49‑1 (MQ=255)

                               gCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTc                  <  1:2674733/49‑1 (MQ=255)

                                cAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTc                  >  1:722553/1‑48 (MQ=255)

                                  aaCCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGAc               <  1:982184/49‑1 (MQ=255)

                                  aaCCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGAc               <  1:2674066/49‑1 (MQ=255)

                                      aTCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGc           >  1:2238457/1‑49 (MQ=255)

                                      aTCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGc           >  1:1632532/1‑49 (MQ=255)

                                      aTCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGc           >  1:1046140/1‑49 (MQ=255)

                                         cTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtg         <  1:2710278/48‑1 (MQ=255)

                                            tgCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtggtg      >  1:2344842/1‑48 (MQ=255)

                                            tgCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtggtg      <  1:1218128/48‑1 (MQ=255)

                                              cGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGgaa   <  1:761200/49‑1 (MQ=255)

                                               ggTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGgaag  <  1:2252371/49‑1 (MQ=255)

TTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGGAAG  >  NC_000913/3958601‑3958696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.