| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 21 (0.650) +CGAGAT |
16/84 | 0.4 | 48.1% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 52 (1.400) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380064‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAG > NC_000913/4070444‑4070482 |||||| AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:622293/1‑49 GGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACG < 1:2425135/49‑1 AATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:1347659/1‑46 TCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGAT > 1:1646355/1‑49 AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG < 1:2467019/48‑1 AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG > 1:2227177/1‑48 GAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA < 1:366300/49‑1 GAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA < 1:2674953/49‑1 ATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG < 1:1919322/49‑1 TCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGT < 1:2297225/48‑1 GTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTC > 1:416455/1‑49 GTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTC < 1:1657847/49‑1 GTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTC > 1:2370123/1‑49 GACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCC > 1:1031372/1‑49 ACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCC > 1:6930/1‑49 CTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGG > 1:37937/1‑49 GCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:1973563/1‑48 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:1472063/1‑47 AAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:2822616/1‑46 AAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:1303383/1‑46 AGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGA > 1:1511325/1‑47 TTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGG < 1:1609106/49‑1 AGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:1643789/1‑47 AGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:163642/1‑47 GTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGtg < 1:35009/49‑3 |||||| AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380064‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAG > NC_000913/4070444‑4070482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |