New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 380111	0 (0.000)	21 (0.650) +CGAGAT	16/84	0.4	48.1%	coding (732/774 nt)	yaiO	outer membrane protein YaiO
	?	NC_000913	4070444 =	52 (1.400)					intergenic (‑43/+71)	yihR/yihS	putative aldose 1‑epimerase YihR/sulfoquinovose isomerase

AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGC  >  NC_000913/380064‑380156                                                |                                              aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:622293‑M1/1‑48 (MQ=255)  ggAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcg                                             <  1:2425135‑M1/49‑3 (MQ=255)    aaTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:1347659‑M1/1‑45 (MQ=255)      tCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagat                                         >  1:1646355‑M1/1‑43 (MQ=255)        aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg                                        <  1:2467019‑M1/48‑8 (MQ=255)        aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg                                        >  1:2227177‑M1/1‑41 (MQ=255)         gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgga                                      <  1:366300‑M1/49‑10 (MQ=255)         gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgga                                      <  1:2674953‑M1/49‑10 (MQ=255)           aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacg                                    <  1:1919322‑M1/49‑12 (MQ=255)              tCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggt                                  <  1:2297225‑M1/48‑14 (MQ=255)                   gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc                            >  1:416455‑M1/1‑30 (MQ=255)                   gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc                            <  1:1657847‑M1/49‑20 (MQ=255)                   gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc                            >  1:2370123‑M1/1‑30 (MQ=255)                       gACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccc                        >  1:1031372‑M1/1‑26 (MQ=255)                        aCGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccc                       >  1:6930‑M1/1‑25 (MQ=255)                             cTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgg                  >  1:37937‑M1/1‑20 (MQ=255)                               gCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:1973563‑M1/1‑18 (MQ=255)                                cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:1472063‑M1/1‑17 (MQ=255)                                 aaGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:2822616‑M1/1‑16 (MQ=255)                                 aaGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:1303383‑M1/1‑16 (MQ=255)                                  aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga               >  1:1511325‑M1/1‑15 (MQ=255)                                    ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagg           <  1:1609106‑M1/49‑37 (MQ=255)                                        aGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt         >  1:1643789‑M1/1‑9 (MQ=255)                                        aGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt         >  1:163642‑M1/1‑9 (MQ=255)                                             gTTAcgagatggacggtcccctcgcccccttggggagagggttagggtg  <  1:35009‑M1/49‑46 (MQ=255)                                                |                                              AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGC  >  NC_000913/380064‑380156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.