| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 21 (0.650) +CGAGAT |
16/84 | 0.4 | 48.1% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 52 (1.400) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
CGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAC > NC_000913/4070396‑4070492 | cGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCg < 1:594614/49‑1 (MQ=255)cGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCg < 1:505855/49‑1 (MQ=255) gACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCTCCgg < 1:2106402/49‑1 (MQ=255) gACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCgg < 1:970330/49‑1 (MQ=255) gACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCg > 1:1405941/1‑48 (MQ=255) agaatttccaggtcagacgggctgcaagttgcagaccgttacgagatg > 1:2227177‑M2/48‑48 (MQ=255) agaatttccaggtcagacgggctgcaagttgcagaccgttacgagatg < 1:2467019‑M2/1‑1 (MQ=255) gaatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGa < 1:2674953‑M2/3‑1 (MQ=255) gaatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGa < 1:366300‑M2/3‑1 (MQ=255) cATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc > 1:149744/1‑49 (MQ=255) cATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc < 1:2840240/49‑1 (MQ=255) atttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACg < 1:1919322‑M2/5‑1 (MQ=255) aTACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACg > 1:917324/1‑49 (MQ=255) tACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACgg > 1:1579349/1‑49 (MQ=255) tccaggtcagacgggctgcaagttgcagaccgttacgagatGGACGGt < 1:2297225‑M2/7‑1 (MQ=255) gCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTccc < 1:1821564/49‑1 (MQ=255) ccTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTcccc < 1:2061917/49‑1 (MQ=255) tCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc > 1:1245292/1‑49 (MQ=255) tCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc > 1:2569325/1‑49 (MQ=255) gtcagacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTc > 1:416455‑M2/37‑49 (MQ=255) gtcagacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTc < 1:1657847‑M2/13‑1 (MQ=255) gtcagacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTc > 1:2370123‑M2/37‑49 (MQ=255) ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc < 1:2241662/47‑1 (MQ=255) cGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGcc < 1:1865314/49‑1 (MQ=255) cGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGcc > 1:1758308/1‑49 (MQ=255) gacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGccc > 1:1031372‑M2/33‑49 (MQ=255) acgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGcccc > 1:6930‑M2/32‑49 (MQ=255) gAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCt > 1:2551399/1‑49 (MQ=255) gAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCt > 1:1992236/1‑49 (MQ=255) aGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCtt > 1:860615/1‑49 (MQ=255) aGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCtt < 1:1198521/49‑1 (MQ=255) ggCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCttt > 1:422378/1‑49 (MQ=255) gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTg < 1:220368/49‑1 (MQ=255) ctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTgg > 1:37937‑M2/27‑49 (MQ=255) cTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgg > 1:1237664/1‑49 (MQ=255) tGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:644929/1‑49 (MQ=255) gcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTggg > 1:1973563‑M2/25‑48 (MQ=255) gATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:2711141/1‑48 (MQ=255) gATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:2265441/1‑48 (MQ=255) caagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTggg > 1:1472063‑M2/24‑47 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgggg < 1:2819024/48‑1 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgggg < 1:540987/48‑1 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgggg < 1:1317056/48‑1 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg < 1:2516341/47‑1 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:808157/1‑47 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg < 1:1728531/47‑1 (MQ=255) tGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:2697246/1‑46 (MQ=255) aagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTggg > 1:1303383‑M2/23‑46 (MQ=255) aagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTggg > 1:2822616‑M2/23‑46 (MQ=255) gTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGga > 1:2140084/1‑47 (MQ=255) agttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGga > 1:1511325‑M2/22‑47 (MQ=255) ttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAgg < 1:1609106‑M2/30‑1 (MQ=255) aaaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAggg < 1:151852/49‑1 (MQ=255) aaaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAggg > 1:2137854/1‑49 (MQ=255) aaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGt < 1:1569949/49‑1 (MQ=255) aCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGt > 1:2791986/1‑48 (MQ=255) aCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGt > 1:30531/1‑48 (MQ=255) agaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGt > 1:163642‑M2/16‑47 (MQ=255) agaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGt > 1:1643789‑M2/16‑47 (MQ=255) ccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAg < 1:131478/49‑1 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg < 1:2402112/49‑1 (MQ=255) aaaaaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg > 1:752471/1‑48 (MQ=255) aaaaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg > 1:1392808/1‑47 (MQ=255) aaaaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGga < 1:2552406/49‑1 (MQ=255) gttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTtagggtg < 1:35009‑M2/39‑3 (MQ=255) aaaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGgag < 1:708220/49‑1 (MQ=255) aaaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGgag < 1:568905/49‑1 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGagag < 1:1110457/49‑1 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGagag < 1:1510648/49‑1 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGagag > 1:1186451/1‑49 (MQ=255) cTGCTCCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgg < 1:2336382/49‑1 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGa > 1:2251040/1‑48 (MQ=255) ccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaa > 1:1249543/1‑48 (MQ=255) ggACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAc > 1:2790793/1‑49 (MQ=255) ggACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAc > 1:1581039/1‑49 (MQ=255) ggACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAc > 1:944074/1‑49 (MQ=255) | CGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAC > NC_000913/4070396‑4070492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |