| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 26 [0] | [0] 26 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 25 (0.680) | 18/96 | 0.4 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
CTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509589‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCG > NC_000913/2517950‑2517990 CTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGG < 1:2102163/49‑1 GCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACT < 1:1312606/49‑1 AAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAA > 1:1747068/1‑49 ACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACC < 1:2615765/49‑1 ACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACC < 1:154399/49‑1 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC > 1:848215/1‑49 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC < 1:1446227/49‑1 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC < 1:1153978/49‑1 CTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:250224/1‑46 GACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGAC > 1:1281614/1‑49 GACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGAC > 1:237751/1‑49 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACT > 1:402898/1‑49 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACT < 1:2403455/49‑1 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTA < 1:1681652/45‑1 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTA < 1:120431/45‑1 CCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGT < 1:1548044/49‑1 CGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTAT < 1:2046240/49‑1 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTAC < 1:2671855/49‑1 AGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA < 1:2659666/48‑1 AGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA < 1:610797/48‑1 AATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGC < 1:22607/49‑1 AATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGC < 1:1776886/49‑1 ATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCG < 1:2722385/49‑1 ATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCG > 1:2817079/1‑49 ATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCG > 1:1137542/1‑49 CTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509589‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCG > NC_000913/2517950‑2517990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |