| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 26 [0] | [0] 26 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 25 (0.680) | 18/96 | 0.4 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
TGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACATGCTCCATCCGCGAGCCAGAACCATGTTGTTATTATCGCTC > NC_000913/2509583‑2509671 | tGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACa < 1:1007344/48‑1 (MQ=255) cTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcgg < 1:2102163‑M1/49‑8 (MQ=255) gCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcact < 1:1312606‑M1/49‑12 (MQ=255) aaaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaa > 1:1747068‑M1/1‑36 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacc < 1:2615765‑M1/49‑16 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacc < 1:154399‑M1/49‑16 (MQ=255) gTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggac > 1:848215‑M1/1‑29 (MQ=255) gTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggac < 1:1446227‑M1/49‑21 (MQ=255) gTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggac < 1:1153978‑M1/49‑21 (MQ=255) cTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacg > 1:250224‑M1/1‑25 (MQ=255) gACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagac > 1:1281614‑M1/1‑23 (MQ=255) gACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagac > 1:237751‑M1/1‑23 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagact > 1:402898‑M1/1‑22 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagact < 1:2403455‑M1/49‑28 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgta < 1:1681652‑M1/45‑24 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgta < 1:120431‑M1/45‑24 (MQ=255) cccGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgt < 1:1548044‑M1/49‑30 (MQ=255) cGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtat < 1:2046240‑M1/49‑32 (MQ=255) aTAAGGAATAGAACAcaggcggcactaacccggacgtagactgtattac < 1:2671855‑M1/49‑35 (MQ=255) aGGAATAGAACAcaggcggcactaacccggacgtagactgtattacaa < 1:2659666‑M1/48‑37 (MQ=255) aGGAATAGAACAcaggcggcactaacccggacgtagactgtattacaa < 1:610797‑M1/48‑37 (MQ=255) aaTAGAACAcaggcggcactaacccggacgtagactgtattacaaaagc < 1:22607‑M1/49‑41 (MQ=255) aaTAGAACAcaggcggcactaacccggacgtagactgtattacaaaagc < 1:1776886‑M1/49‑41 (MQ=255) aTAGAACAcaggcggcactaacccggacgtagactgtattacaaaagcg < 1:2722385‑M1/49‑42 (MQ=255) aTAGAACAcaggcggcactaacccggacgtagactgtattacaaaagcg > 1:2817079‑M1/1‑8 (MQ=255) aTAGAACAcaggcggcactaacccggacgtagactgtattacaaaagcg > 1:1137542‑M1/1‑8 (MQ=255) | TGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACATGCTCCATCCGCGAGCCAGAACCATGTTGTTATTATCGCTC > NC_000913/2509583‑2509671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |