New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 213730	17 (0.620)	43 (2.170) +AGGACTTCTTGAA	4/70	1.7	75.3%	coding (203/255 nt)	rof	modulator of Rho‑dependent transcription termination
	?	NC_000913	3958648 =	22 (0.800)					coding (679/1476 nt)	ilvC	ketol‑acid reductoisomerase (NADP(+))

GGTGGCTAAAGCTGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/213713‑213730 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTATGTTGCAGGCTGGCTCTCT  >  NC_000913/3958648‑3958670                   |||||||||||||                        taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG        >  1:711153/3‑48 taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG        >  1:551606/3‑48 taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG        >  1:1235302/3‑48 taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG        >  1:1791002/3‑48 taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG        >  1:1691891/3‑48 taTGGCTAAAGCTAGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG        >  1:793328/3‑48  aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa      >  1:1472983/2‑48  aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa      >  1:1462623/2‑48   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac     <  1:1050710/49‑3   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac     >  1:2123531/1‑47   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac     <  1:2014973/49‑3   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac     >  1:1551477/1‑47   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac     >  1:1177417/1‑47   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa      <  1:75617/48‑2   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa      <  1:873063/48‑2   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa      <  1:1778699/48‑2   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa      <  1:1329121/48‑2   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa      <  1:186992/48‑2   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa      <  1:225096/48‑2   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCT      <  1:1551517/48‑1   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC       <  1:1285579/47‑1   TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC       <  1:1318636/47‑1    GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT    >  1:140713/1‑49    GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT    >  1:311653/1‑49    GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT    >  1:1586595/1‑49    GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT    >  1:1399351/1‑49     GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt   <  1:2116350/49‑2     GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt   <  1:1318930/49‑2     GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt   <  1:448770/49‑2     GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt   >  1:1447647/1‑48     GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt   >  1:598452/1‑48     GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT    <  1:513884/48‑1     GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT    <  1:62218/48‑1     GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT    <  1:721474/48‑1      CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc  >  1:833763/1‑47      CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc  >  1:962386/1‑47      CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc  >  1:703213/1‑47      CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc  <  1:479034/49‑3      CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc  >  1:430259/1‑47      CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc  <  1:281719/49‑3      CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc  >  1:1347075/1‑47      CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTta  <  1:1132001/49‑3      CTAAAGCTGGTAAAGGACTTCTTGAAGGGACGTTGCAGGCTGGCACTtc  >  1:70696/1‑47                   |||||||||||||                        GGTGGCTAAAGCTGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/213713‑213730 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTATGTTGCAGGCTGGCTCTCT  >  NC_000913/3958648‑3958670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.