| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 213730 | 17 (0.620) | 43 (2.170) +AGGACTTCTTGAA |
4/70 | 1.7 | 75.3% | coding (203/255 nt) | rof | modulator of Rho‑dependent transcription termination |
| ? | NC_000913 | 3958648 = | 22 (0.800) | coding (679/1476 nt) | ilvC | ketol‑acid reductoisomerase (NADP(+)) | |||||
CTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCGACGAC > NC_000913/213688‑213776 | cTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTAt < 1:497635/49‑1 (MQ=255) tACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATc > 1:862436/1‑48 (MQ=255) ccaccaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATc > 1:1487414/1‑46 (MQ=255) accaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGAc < 1:489772/49‑1 (MQ=255) gTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCt < 1:957003/49‑1 (MQ=255) gTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCt < 1:537748/49‑1 (MQ=255) gTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCt > 1:74051/1‑49 (MQ=255) tACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTc < 1:144376/49‑1 (MQ=255) aCCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTcg > 1:62033/1‑49 (MQ=255) aCCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTcg > 1:151461/1‑49 (MQ=255) tCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGtt < 1:41159/48‑1 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1791002‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:711153‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:551606‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1691891‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1235302‑M1/3‑18 (MQ=255) tatggCTAAAGCTAGTAAaggacttcttgaaggtacgttgcaggctgg > 1:793328‑M1/3‑18 (MQ=255) gTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCa < 1:506008/49‑1 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:1472983‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:1462623‑M1/2‑17 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggct < 1:1551517‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:1050710‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:1177417‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:2123531‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:2014973‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:1551477‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:1778699‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:225096‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:1329121‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:75617‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:186992‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:873063‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:1285579‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:1318636‑M1/47‑32 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:140713‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:311653‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:1399351‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:1586595‑M1/1‑15 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:1318930‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:1447647‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:598452‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:448770‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:2116350‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:513884‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:721474‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:62218‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGc < 1:2002621/48‑1 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:833763‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:962386‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:703213‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:479034‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:430259‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:281719‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1347075‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactta < 1:1132001‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaagggacgttgcaggctggcacttc > 1:70696‑M1/1‑13 (MQ=255) aaGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGcc < 1:576570/48‑1 (MQ=255) gCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTc > 1:1305431/1‑48 (MQ=255) tGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcgac > 1:496789/1‑49 (MQ=255) aaTTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCgacgac > 1:1262393/1‑48 (MQ=255) | CTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCGACGAC > NC_000913/213688‑213776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |