| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 213730 | 17 (0.620) | 43 (2.170) +AGGACTTCTTGAA |
4/70 | 1.7 | 75.3% | coding (203/255 nt) | rof | modulator of Rho‑dependent transcription termination |
| ? | NC_000913 | 3958648 = | 22 (0.800) | coding (679/1476 nt) | ilvC | ketol‑acid reductoisomerase (NADP(+)) | |||||
GTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGGAAG > NC_000913/3958600‑3958696 | gTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCg > 1:692954/1‑49 (MQ=255)gTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCg < 1:2078981/49‑1 (MQ=255)gTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCg > 1:794031/1‑49 (MQ=255) ttGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCgg > 1:457964/1‑49 (MQ=255) gCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTa > 1:1981972/1‑49 (MQ=255) tGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTg > 1:335407/1‑47 (MQ=255) tGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTg > 1:867376/1‑47 (MQ=255) aaaTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAgg > 1:1182836/1‑49 (MQ=255) aaaTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAgg < 1:1935764/49‑1 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1791002‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:551606‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:711153‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1691891‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1235302‑M2/32‑48 (MQ=255) tatggctaaagctagtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:793328‑M2/32‑48 (MQ=255) gACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggctggct > 1:319246/1‑49 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:1462623‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:1472983‑M2/31‑48 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac < 1:1050710‑M2/20‑3 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:2123531‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac < 1:2014973‑M2/20‑3 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:1551477‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:1177417‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:873063‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:1778699‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:186992‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:75617‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:1329121‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:225096‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggct < 1:1551517‑M2/19‑1 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc < 1:1285579‑M2/18‑1 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc < 1:1318636‑M2/18‑1 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:311653‑M2/29‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:1399351‑M2/29‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:140713‑M2/29‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:1586595‑M2/29‑49 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt < 1:2116350‑M2/22‑2 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:598452‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:1447647‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt < 1:448770‑M2/22‑2 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt < 1:1318930‑M2/22‑2 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:62218‑M2/21‑1 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:721474‑M2/21‑1 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:513884‑M2/21‑1 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:1347075‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:281719‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:833763‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:430259‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:703213‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:479034‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:962386‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcactta < 1:1132001‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGGACGTTGCAGGCTggcacttc > 1:70696‑M2/27‑47 (MQ=255) aTGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTctg < 1:1670721/48‑1 (MQ=255) tGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTATctgct < 1:192052/49‑1 (MQ=255) ggCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCtgt > 1:2064101/1‑49 (MQ=255) ggCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCtgt < 1:1465962/49‑1 (MQ=255) cAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCg < 1:473266/49‑1 (MQ=255) aaaCCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGa < 1:1446833/49‑1 (MQ=255) cATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAg > 1:1669545/1‑49 (MQ=255) aTCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGc > 1:528297/1‑49 (MQ=255) tCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCt < 1:385431/49‑1 (MQ=255) ccTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtg > 1:2074273/1‑49 (MQ=255) cTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtgg > 1:253999/1‑49 (MQ=255) cTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtg < 1:410567/48‑1 (MQ=255) ggTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtggtgg > 1:1396103/1‑46 (MQ=255) ggTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGgaag < 1:1318640/49‑1 (MQ=255) | GTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGGAAG > NC_000913/3958600‑3958696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |