New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3801110 (0.000)15 (0.710)
+CGAGATGGACG		 14/74 0.2 59.2% coding (732/774 nt) yaiO outer membrane protein YaiO
?NC_000913 624576 = 27 (0.990)intergenic (‑66/‑309) fepB/entC ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC

ATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/380068‑380111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGG  >  NC_000913/624576‑624614
                                            |||||||||||                                       
ATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC                                                   >  1:925607/1‑45
    GAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA                                           <  1:1097518/49‑1
    GAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA                                           <  1:1092274/49‑1
      ATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG                                         <  1:564785/49‑1
         TCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGT                                       <  1:1946184/48‑1
          CCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCC                                     >  1:615496/1‑49
            AGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCC                                   >  1:1859147/1‑49
              GTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTC                                 <  1:563903/49‑1
                CAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGC                               >  1:1296422/1‑49
                     GGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCct                          >  1:1699956/1‑47
                        CTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGG                       <  1:1997745/49‑1
                             AGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGA                    >  1:2038162/1‑47
                                 GCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGG               <  1:1556872/48‑1
                                    GACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAG           >  1:2070648/1‑49
                                       CGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGT        <  1:2105891/49‑1
                                        GTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGT        >  1:1890420/1‑48
                                         TTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGA      <  1:1687698/49‑1
                                          TACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAG     >  1:687980/1‑49
                                           ACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAG     <  1:1744505/48‑1
                                             GAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGG  >  1:509892/1‑49
                                             GAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGG  >  1:764998/1‑49
                                            |||||||||||                                       
ATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/380068‑380111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGG  >  NC_000913/624576‑624614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.