New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 380111	0 (0.000)	15 (0.710) +CGAGATGGACG	14/74	0.2	59.2%	coding (732/774 nt)	yaiO	outer membrane protein YaiO
	?	NC_000913	624576 =	27 (0.990)					intergenic (‑66/‑309)	fepB/entC	ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC

AATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAG  >  NC_000913/624530‑624623                                               |                                                tccaggtcagacgggctgcaagttgcagaccgttacgagatggacgGt                                                <  1:1946184‑M2/2‑1 (MQ=255) aataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGt                                                <  1:785955/48‑1 (MQ=255)  ccaggtcagacgggctgcaagttgcagaccgttacgagatggacgGTcc                                              >  1:615496‑M2/46‑49 (MQ=255)  ataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTcc                                              >  1:1976968/1‑49 (MQ=255)    aggtcagacgggctgcaagttgcagaccgttacgagatggacgGTcccc                                            >  1:1859147‑M2/44‑49 (MQ=255)    aaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTcccc                                            >  1:963090/1‑49 (MQ=255)     aGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCt                                           >  1:269063/1‑49 (MQ=255)      gtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTc                                          <  1:563903‑M2/8‑1 (MQ=255)        ttAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGc                                        >  1:1950690/1‑49 (MQ=255)        cagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGc                                        >  1:1296422‑M2/40‑49 (MQ=255)          aaGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGccc                                      >  1:1829598/1‑49 (MQ=255)            gggCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCt                                    >  1:13756/1‑49 (MQ=255)             gggctgcaagttgcagaccgttacgagatggacgGTCCCCTcgccccct                                   >  1:1699956‑M2/35‑47 (MQ=255)             ggCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCtt                                   >  1:868930/1‑49 (MQ=255)               cGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTg                                 >  1:630667/1‑49 (MQ=255)               cGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTg                                 <  1:193513/49‑1 (MQ=255)                ctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTgg                                <  1:1997745‑M2/18‑1 (MQ=255)                  aaTGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTggg                               >  1:1261613/1‑48 (MQ=255)                   aTGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGga                             <  1:760376/49‑1 (MQ=255)                    tGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTggg                               >  1:181298/1‑46 (MQ=255)                     gACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGga                             >  1:437839/1‑47 (MQ=255)                     agttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGga                             >  1:2038162‑M2/27‑47 (MQ=255)                      aCAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGgaga                           <  1:1926703/48‑1 (MQ=255)                      aCAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGagag                          >  1:627239/1‑49 (MQ=255)                       cAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAgg                         <  1:658320/49‑1 (MQ=255)                        aaaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAggg                        >  1:2090153/1‑49 (MQ=255)                         gcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAggg                        <  1:1556872‑M2/26‑1 (MQ=255)                           ttCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt                       >  1:1648309/1‑47 (MQ=255)                           ttCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTa                     <  1:867276/49‑1 (MQ=255)                            gaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAg                    >  1:2070648‑M2/20‑49 (MQ=255)                              gACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAggg                  >  1:1895895/1‑49 (MQ=255)                              gACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAggg                  <  1:1016127/49‑1 (MQ=255)                              gACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg                   <  1:1581616/48‑1 (MQ=255)                               cgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt                 <  1:2105891‑M2/33‑1 (MQ=255)                                gttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt                 >  1:1890420‑M2/16‑48 (MQ=255)                                 ttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGa               <  1:1687698‑M2/35‑1 (MQ=255)                                 aaaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt                 >  1:1952532/1‑47 (MQ=255)                                  tacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAg              >  1:687980‑M2/14‑49 (MQ=255)                                   acgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAg              <  1:1744505‑M2/36‑1 (MQ=255)                                   aGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAgg             <  1:753285/49‑1 (MQ=255)                                     gagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAgggg           >  1:509892‑M2/11‑49 (MQ=255)                                     gagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAgggg           >  1:764998‑M2/11‑49 (MQ=255)                                         caATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAca       <  1:1781682/49‑1 (MQ=255)                                              cGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAcagccag  >  1:2103254/1‑49 (MQ=255)                                               |                                                AATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAG  >  NC_000913/624530‑624623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.