New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 380111 | 0 (0.000) | 15 (0.710) +CGAGATGGACG |
14/74 | 0.2 | 59.2% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
? | NC_000913 | 624576 = | 27 (0.990) | intergenic (‑66/‑309) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC |
AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGCCC > NC_000913/380063‑380158 | aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTa < 1:937673/49‑1 (MQ=255) aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTa < 1:287460/49‑1 (MQ=255) aTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:925607‑M1/1‑44 (MQ=255) gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgga < 1:1097518‑M1/49‑10 (MQ=255) gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgga < 1:1092274‑M1/49‑10 (MQ=255) aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacg < 1:564785‑M1/49‑12 (MQ=255) tCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggt < 1:1946184‑M1/48‑14 (MQ=255) ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcc > 1:615496‑M1/1‑34 (MQ=255) aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc > 1:1859147‑M1/1‑32 (MQ=255) gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc < 1:563903‑M1/49‑20 (MQ=255) cAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgc > 1:1296422‑M1/1‑28 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct > 1:1699956‑M1/1‑23 (MQ=255) cTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgg < 1:1997745‑M1/49‑30 (MQ=255) aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga > 1:2038162‑M1/1‑15 (MQ=255) gCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg < 1:1556872‑M1/48‑38 (MQ=255) gACCGTTAcgagatggacggtcccctcgcccccttggggagagggttag > 1:2070648‑M1/1‑8 (MQ=255) cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggt < 1:2105891‑M1/49‑45 (MQ=255) gTTAcgagatggacggtcccctcgcccccttggggagagggttagggt > 1:1890420‑M1/1‑4 (MQ=255) ttAcgagatggacggtcccctcgcccccttggggagagggttagggtga < 1:1687698‑M1/49‑47 (MQ=255) tAcgagatggacggtcccctcgcccccttggggagagggttagggtgag > 1:687980‑M1/1‑2 (MQ=255) acgagatggacggtcccctcgcccccttggggagagggttagggtgag < 1:1744505‑M1/48‑48 (MQ=255) | AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGCCC > NC_000913/380063‑380158 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |