| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 603,467 | Δ5,885 bp | [ybdG]–insL‑2 | [ybdG], nfsB, ybdF, ybdJ, ybdK, sokE, hokE, insL‑2 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 603467 | 609351 | 5885 | 29 [0] | [0] 29 | [ybdG]–insL‑2 | [ybdG],nfsB,ybdF,ybdJ,ybdK,sokE,hokE,insL‑2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 603466 | 0 (0.000) | 27 (1.030) | 24/92 | 0.0 | 100% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 0 (0.000) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
GCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603421‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGC > NC_000913/609352‑609399 GCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGT > 1:2082533/1‑48 CTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAA > 1:1619504/1‑49 TAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATC > 1:1460003/1‑49 TAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATC > 1:57748/1‑49 AAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATC < 1:11208/48‑1 AATGCCCCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCC < 1:448164/48‑1 AATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCC > 1:1294426/1‑49 ATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCC < 1:1052176/49‑1 ATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCC > 1:1976355/1‑49 CACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCA > 1:611942/1‑49 ACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCAT < 1:423588/49‑1 CCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATA < 1:602794/49‑1 CCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATA > 1:1632782/1‑49 AGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGT > 1:1119437/1‑49 AGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGT > 1:939570/1‑49 AGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGT < 1:423558/49‑1 GAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTT > 1:554230/1‑49 AGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTG > 1:468036/1‑49 AGAGCGAATATCATTGCCAGTTGGCGAGTAATCCCCGCATATCCGGTTG < 1:1360074/49‑1 AGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT > 1:2027472/1‑48 AGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT > 1:200541/1‑48 CGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAG > 1:1488988/1‑49 ATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAT < 1:82836/49‑1 TTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATG < 1:551895/49‑1 CGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGT > 1:293453/1‑47 GGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAG > 1:1692103/1‑49 GGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCA < 1:1339346/48‑1 GAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTG > 1:1174119/1‑49 AGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGC > 1:1820139/1‑49 GCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603421‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGC > NC_000913/609352‑609399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |