| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 603,467 | Δ5,885 bp | [ybdG]–insL‑2 | [ybdG], nfsB, ybdF, ybdJ, ybdK, sokE, hokE, insL‑2 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 603467 | 609351 | 5885 | 29 [0] | [0] 29 | [ybdG]–insL‑2 | [ybdG],nfsB,ybdF,ybdJ,ybdK,sokE,hokE,insL‑2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 603466 | 0 (0.000) | 27 (1.030) | 24/92 | 0.0 | 100% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 0 (0.000) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
GCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATC > NC_000913/603421‑603514 | gCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgt > 1:2082533‑M1/1‑46 (MQ=255) cTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaa > 1:1619504‑M1/1‑45 (MQ=255) tAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatc > 1:1460003‑M1/1‑43 (MQ=255) tAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatc > 1:57748‑M1/1‑43 (MQ=255) aaaTGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatc < 1:11208‑M1/48‑7 (MQ=255) aaTGCCCCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatcc < 1:448164‑M1/48‑8 (MQ=255) aaTGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatccc > 1:1294426‑M1/1‑41 (MQ=255) aTGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatcccc < 1:1052176‑M1/49‑10 (MQ=255) aTGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatcccc > 1:1976355‑M1/1‑40 (MQ=255) cACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatccccgca > 1:611942‑M1/1‑37 (MQ=255) aCCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatccccgcat < 1:423588‑M1/49‑14 (MQ=255) cccGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatccccgcata < 1:602794‑M1/49‑15 (MQ=255) cccGCCAGAGAGCGAATATCATTGCCGGTTGGCGAgtaatccccgcata > 1:1632782‑M1/1‑35 (MQ=255) agagagCGAATATCATTGCCGGTTGGCGAgtaatccccgcatatccggt > 1:1119437‑M1/1‑29 (MQ=255) agagagCGAATATCATTGCCGGTTGGCGAgtaatccccgcatatccggt > 1:939570‑M1/1‑29 (MQ=255) agagagCGAATATCATTGCCGGTTGGCGAgtaatccccgcatatccggt < 1:423558‑M1/49‑21 (MQ=255) gagagCGAATATCATTGCCGGTTGGCGAgtaatccccgcatatccggtt > 1:554230‑M1/1‑28 (MQ=255) agagCGAATATCATTGCCGGTTGGCGAgtaatccccgcatatccggttg > 1:468036‑M1/1‑27 (MQ=255) agagCGAATATCATTGCCAGTTGGCGAgtaatccccgcatatccggttg < 1:1360074‑M1/49‑23 (MQ=255) agCGAATATCATTGCCGGTTGGCGAgtaatccccgcatatccggttgt > 1:2027472‑M1/1‑25 (MQ=255) agCGAATATCATTGCCGGTTGGCGAgtaatccccgcatatccggttgt > 1:200541‑M1/1‑25 (MQ=255) cGAATATCATTGCCGGTTGGCGAgtaatccccgcatatccggttgtcag > 1:1488988‑M1/1‑23 (MQ=255) aTTGCCGGTTGGCGAgtaatccccgcatatccggttgtcaggtcaggat < 1:82836‑M1/49‑35 (MQ=255) ttGCCGGTTGGCGAgtaatccccgcatatccggttgtcaggtcaggatg < 1:551895‑M1/49‑36 (MQ=255) cGGTTGGCGAgtaatccccgcatatccggttgtcaggtcaggatggt > 1:293453‑M1/1‑10 (MQ=255) ggTTGGCGAgtaatccccgcatatccggttgtcaggtcaggatggtaag > 1:1692103‑M1/1‑9 (MQ=255) ggCGAgtaatccccgcatatccggttgtcaggtcaggatggtaaggca < 1:1339346‑M1/48‑44 (MQ=255) gAgtaatccccgcatatccggttgtcaggtcaggatggtaaggcacctg > 1:1174119‑M1/1‑2 (MQ=255) agtaatccccgcatatccggttgtcaggtcaggatggtaaggcacctgc > 1:1820139‑M1/1‑1 (MQ=255) | GCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATC > NC_000913/603421‑603514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |