| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 23 (0.900) | 18/90 | 0.2 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846255‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > NC_000913/2867269‑2867315 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 1:1632373/1‑49CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 1:668056/1‑49 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:142263/1‑49 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG < 1:164465/49‑1 CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGG < 1:2040853/49‑1 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1336118/1‑48 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG < 1:393157/49‑1 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGA < 1:1278745/48‑1 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC < 1:1586795/49‑1 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA > 1:373341/1‑49 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA < 1:1782740/49‑1 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT < 1:692587/49‑1 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT < 1:1746917/49‑1 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:1941028/1‑49 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:244377/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCT < 1:1555228/48‑1 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC > 1:1742014/1‑49 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC > 1:318230/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG < 1:793261/49‑1 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG > 1:2043546/1‑49 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC > 1:1939755/1‑49 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:588149/1‑48 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:1227811/1‑48 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG > 1:756937/1‑48 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 1:1826292/1‑48 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846255‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > NC_000913/2867269‑2867315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |