| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 23 (0.900) | 18/90 | 0.2 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCA > NC_000913/2846255‑2846347 | cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca > 1:1632373‑M1/1‑46 (MQ=255)cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca > 1:668056‑M1/1‑46 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat > 1:142263‑M1/1‑45 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg < 1:164465‑M1/49‑8 (MQ=255) ccATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcgg < 1:2040853‑M1/49‑12 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:1336118‑M1/1‑36 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag < 1:393157‑M1/49‑18 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgaga < 1:1278745‑M1/48‑17 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc < 1:1586795‑M1/49‑20 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgaca > 1:373341‑M1/1‑26 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgaca < 1:1782740‑M1/49‑24 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacat < 1:692587‑M1/49‑25 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacat < 1:1746917‑M1/49‑25 (MQ=255) ttCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:1941028‑M1/1‑24 (MQ=255) ttCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:244377‑M1/1‑24 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatct < 1:1555228‑M1/48‑27 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac > 1:1742014‑M1/1‑19 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac > 1:318230‑M1/1‑19 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg < 1:793261‑M1/49‑32 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg > 1:2043546‑M1/1‑13 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc > 1:1939755‑M1/1‑12 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc > 1:588149‑M1/1‑9 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc > 1:1227811‑M1/1‑9 (MQ=255) cGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg > 1:756937‑M1/1‑3 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgca > 1:1826292‑M1/1‑1 (MQ=255) | CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCA > NC_000913/2846255‑2846347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |