New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2846300	0 (0.000)	23 (0.900)	18/90	0.2	100%	coding (172/1710 nt)	hycE	formate hydrogenlyase subunit HycE
	?	NC_000913	2867269 =	0 (0.000)					coding (283/993 nt)	rpoS	RNA polymerase, sigma S (sigma 38) factor

CCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA  >  NC_000913/2867223‑2867316                                               |                                                cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca                                               >  1:668056‑M2/47‑49 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca                                               >  1:1632373‑M2/47‑49 (MQ=255)  gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat                                              >  1:142263‑M2/46‑49 (MQ=255)     atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg                                           <  1:164465‑M2/7‑1 (MQ=255)         ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcgg                                       <  1:2040853‑M2/11‑1 (MQ=255)           attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc                                      >  1:1336118‑M2/37‑48 (MQ=255)               agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCgaga                                  <  1:1278745‑M2/16‑1 (MQ=255)               agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag                                 <  1:393157‑M2/17‑1 (MQ=255)                 tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc                               <  1:1586795‑M2/19‑1 (MQ=255)                     cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa                           <  1:1782740‑M2/23‑1 (MQ=255)                     cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa                           >  1:373341‑M2/27‑49 (MQ=255)                      gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt                          <  1:1746917‑M2/24‑1 (MQ=255)                      gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt                          <  1:692587‑M2/24‑1 (MQ=255)                       ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc                         >  1:244377‑M2/25‑49 (MQ=255)                       ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc                         >  1:1941028‑M2/25‑49 (MQ=255)                         cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtct                        <  1:1555228‑M2/26‑1 (MQ=255)                            cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc                    >  1:318230‑M2/20‑49 (MQ=255)                            cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc                    >  1:1742014‑M2/20‑49 (MQ=255)                             gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg                   <  1:793261‑M2/31‑1 (MQ=255)                                  caaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg              >  1:2043546‑M2/14‑49 (MQ=255)                                   aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc             >  1:1939755‑M2/13‑49 (MQ=255)                                      cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc           >  1:588149‑M2/10‑48 (MQ=255)                                      cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc           >  1:1227811‑M2/10‑48 (MQ=255)                                            cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg     >  1:756937‑M2/4‑48 (MQ=255)                                              aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa   >  1:1826292‑M2/2‑48 (MQ=255)                                               tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa  >  1:145012/1‑48 (MQ=255)                                               |                                                CCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA  >  NC_000913/2867223‑2867316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.