| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 36 [0] | [0] 36 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 36 (1.310) | 26/96 | 0.0 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
CAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3090298‑3090346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAA > NC_000913/3091055‑3091102 CAAAACAGCTTTCGCTACTTTGCTGGCTCGTTTTAACACGGAG‑AAGTGC < 1:1743047/49‑1 AACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTA < 1:2113948/49‑1 AACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTA < 1:1985117/49‑1 AACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTA < 1:957286/49‑1 CAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACA < 1:1039729/49‑1 CAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACA < 1:699752/49‑1 AGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACAC > 1:2176/1‑49 CTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTA < 1:992565/49‑1 CTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACAC > 1:1570082/1‑47 TTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGC > 1:1735878/1‑49 TCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAG < 1:493121/47‑1 GCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGG > 1:668432/1‑48 GCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGG > 1:597282/1‑48 ccTTGCTGGCTCTTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATT < 1:1361757/46‑1 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTC < 1:733179/49‑1 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTC < 1:950029/49‑1 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTC < 1:1076035/49‑1 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATT < 1:1296617/48‑1 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGAT < 1:210612/47‑1 GTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCT < 1:719889/49‑1 GTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCT > 1:647540/1‑49 CTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTT < 1:1409014/49‑1 TGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTG > 1:563547/1‑49 GCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTT < 1:928520/49‑1 CTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTA < 1:141120/49‑1 CTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTT > 1:442718/1‑48 TCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAA > 1:59552/1‑49 GTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAAC < 1:1615100/48‑1 TTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCC < 1:878560/48‑1 TTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCC < 1:528218/48‑1 TTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCC < 1:279183/48‑1 TAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCT < 1:478413/48‑1 ACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAC < 1:1400220/48‑1 agAAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGC > 1:174617/3‑49 GTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAC < 1:735908/49‑1 GCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAA > 1:2020228/1‑49 CAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3090298‑3090346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAA > NC_000913/3091055‑3091102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |