Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 36 [0] | [0] 36 | endA | DNA‑specific endonuclease I |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3090346 | 0 (0.000) | 36 (1.310) | 26/96 | 0.0 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase |
AATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAA > NC_000913/3091007‑3091102 | caaaacagctttcgctactttgctggctcgttttaacacggagaagtgc < 1:1743047‑M2/1‑1 (MQ=255) aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa < 1:957286‑M2/4‑1 (MQ=255) aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa < 1:2113948‑M2/4‑1 (MQ=255) aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa < 1:1985117‑M2/4‑1 (MQ=255) cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca < 1:1039729‑M2/6‑1 (MQ=255) cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca < 1:699752‑M2/6‑1 (MQ=255) agctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac > 1:2176‑M2/43‑49 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac > 1:1570082‑M2/41‑47 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTa < 1:992565‑M2/9‑1 (MQ=255) ttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc > 1:1735878‑M2/39‑49 (MQ=255) tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg < 1:493121‑M2/10‑1 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:668432‑M2/36‑48 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:597282‑M2/36‑48 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt < 1:1296617‑M2/17‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt < 1:210612‑M2/16‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc < 1:1076035‑M2/18‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc < 1:733179‑M2/18‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc < 1:950029‑M2/18‑1 (MQ=255) ccttgctggctctttttaacacggagaagtgCCTACACTAGCGGGAtt < 1:1361757‑M2/17‑1 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCt > 1:647540‑M2/31‑49 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCt < 1:719889‑M2/19‑1 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt < 1:1409014‑M2/23‑1 (MQ=255) tggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTg > 1:563547‑M2/26‑49 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt < 1:928520‑M2/26‑1 (MQ=255) ctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt > 1:442718‑M2/23‑48 (MQ=255) ctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTa < 1:141120‑M2/27‑1 (MQ=255) tcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTaa > 1:59552‑M2/22‑49 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAc < 1:1615100‑M2/29‑1 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc < 1:878560‑M2/32‑1 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc < 1:528218‑M2/32‑1 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc < 1:279183‑M2/32‑1 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCt < 1:478413‑M2/33‑1 (MQ=255) acacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAc < 1:1400220‑M2/35‑1 (MQ=255) agaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgc > 1:174617‑M2/8‑49 (MQ=255) gtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAc < 1:735908‑M2/46‑1 (MQ=255) gCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACaa > 1:2020228‑M2/2‑49 (MQ=255) | AATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAA > NC_000913/3091007‑3091102 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |