| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 36 [0] | [0] 36 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 36 (1.310) | 26/96 | 0.0 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
CAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTT > NC_000913/3090298‑3090394 | cAAAACAGCTTTCGCTACTTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc < 1:1743047‑M1/49‑2 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:2113948‑M1/49‑5 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:1985117‑M1/49‑5 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:957286‑M1/49‑5 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:1039729‑M1/49‑7 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:699752‑M1/49‑7 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:2176‑M1/1‑42 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 1:992565‑M1/49‑10 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:1570082‑M1/1‑40 (MQ=255) ttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:1735878‑M1/1‑38 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:493121‑M1/47‑11 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:668432‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:597282‑M1/1‑35 (MQ=255) ccttgcTGGCTCTTTTTAACACGGAG‑AAGTGcctacactagcgggatt < 1:1361757‑M1/46‑18 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc < 1:733179‑M1/49‑19 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc < 1:950029‑M1/49‑19 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc < 1:1076035‑M1/49‑19 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt < 1:1296617‑M1/48‑18 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat < 1:210612‑M1/47‑17 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct < 1:719889‑M1/49‑20 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct > 1:647540‑M1/1‑30 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt < 1:1409014‑M1/49‑24 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg > 1:563547‑M1/1‑25 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:928520‑M1/49‑27 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:141120‑M1/49‑28 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt > 1:442718‑M1/1‑22 (MQ=255) tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa > 1:59552‑M1/1‑21 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac < 1:1615100‑M1/48‑30 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:878560‑M1/48‑33 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:528218‑M1/48‑33 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:279183‑M1/48‑33 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:478413‑M1/48‑34 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac < 1:1400220‑M1/48‑36 (MQ=255) agaagtGcctacactagcgggattctttttgttaacccctaccccacgc > 1:174617‑M1/3‑7 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtac < 1:735908‑M1/49‑47 (MQ=255) gcctacactagcgggattctttttgttaacccctaccccacgcgtacaa > 1:2020228‑M1/1‑1 (MQ=255) | CAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTT > NC_000913/3090298‑3090394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |