| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 43 [0] | [0] 44 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 41 (1.530) | 33/94 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761944‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770243‑3770290 GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC > 1:1048323/1‑49 ACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCT < 1:1457613/49‑1 AGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAA > 1:1821039/1‑49 AGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAA > 1:1650562/1‑49 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAAT < 1:109991/49‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAAT > 1:1960459/1‑49 TTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAAT > 1:338507/1‑48 TCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGA < 1:417642/48‑1 CATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGAT < 1:269862/48‑1 ATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATC > 1:854359/1‑48 TGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCC > 1:1675505/1‑48 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT < 1:1134098/49‑1 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT > 1:497017/1‑48 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT > 1:1401579/1‑48 GTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAA < 1:1578349/49‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGA > 1:225828/1‑48 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGA < 1:2039765/48‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGA > 1:70265/1‑48 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATA < 1:1286253/47‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG < 1:143412/48‑1 GCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCA > 1:1161200/1‑49 GCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCA > 1:1705723/1‑49 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT < 1:880030/49‑1 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT > 1:1750503/1‑49 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT < 1:1239158/49‑1 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:1436324/1‑48 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:665326/1‑48 GAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAG > 1:1854056/1‑49 GAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAG < 1:1332230/49‑1 GAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAG > 1:461646/1‑49 AATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGG > 1:194271/1‑49 AATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGG > 1:758218/1‑49 ATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGT > 1:1807228/1‑49 ATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCA > 1:1722464/1‑49 TCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT < 1:715862/49‑1 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTC < 1:119202/49‑1 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTC > 1:1195342/1‑49 TATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTT < 1:1838995/49‑1 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG < 1:1230367/49‑1 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTA < 1:212668/48‑1 GCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCA < 1:1285627/49‑1 GCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG > 1:313593/1‑47 CTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:1454354/1‑49 GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761944‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770243‑3770290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |