| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 43 [0] | [0] 44 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 41 (1.530) | 33/94 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
TAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770195‑3770290 | acgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct < 1:1457613‑M2/1‑1 (MQ=255) agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa > 1:1821039‑M2/46‑49 (MQ=255) agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa > 1:1650562‑M2/46‑49 (MQ=255) gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt < 1:109991‑M2/5‑1 (MQ=255) gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt > 1:1960459‑M2/45‑49 (MQ=255) tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt > 1:338507‑M2/44‑48 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa < 1:417642‑M2/7‑1 (MQ=255) catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt < 1:269862‑M2/8‑1 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 1:854359‑M2/40‑48 (MQ=255) tgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc > 1:1675505‑M2/39‑48 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt < 1:1134098‑M2/14‑1 (MQ=255) gagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt > 1:1401579‑M2/35‑48 (MQ=255) gagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt > 1:497017‑M2/35‑48 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa < 1:1578349‑M2/17‑1 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa > 1:70265‑M2/30‑48 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa > 1:225828‑M2/30‑48 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa < 1:2039765‑M2/19‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa < 1:1286253‑M2/21‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg < 1:143412‑M2/24‑1 (MQ=255) gcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa > 1:1161200‑M2/24‑49 (MQ=255) gcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa > 1:1705723‑M2/24‑49 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt < 1:880030‑M2/27‑1 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt > 1:1750503‑M2/23‑49 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt < 1:1239158‑M2/27‑1 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:1436324‑M2/21‑48 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:665326‑M2/21‑48 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg > 1:1854056‑M2/19‑49 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg < 1:1332230‑M2/31‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg > 1:461646‑M2/19‑49 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTgg > 1:194271‑M2/15‑49 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTgg > 1:758218‑M2/15‑49 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 1:1807228‑M2/14‑49 (MQ=255) atcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCa > 1:1722464‑M2/12‑49 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt < 1:715862‑M2/39‑1 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc > 1:1195342‑M2/9‑49 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc < 1:119202‑M2/41‑1 (MQ=255) tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCtt < 1:1838995‑M2/43‑1 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag < 1:1230367‑M2/45‑1 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa < 1:212668‑M2/44‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca < 1:1285627‑M2/47‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag > 1:313593‑M2/3‑47 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:1454354‑M2/2‑49 (MQ=255) tcAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:273417/1‑48 (MQ=255) tcAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:2003888/1‑48 (MQ=255) | TAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770195‑3770290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |