| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 43 [0] | [0] 44 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 41 (1.530) | 33/94 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCA > NC_000913/3761944‑3762040 | gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC > 1:1048323‑M1/1‑49 (MQ=255) acgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt < 1:1457613‑M1/49‑2 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:1821039‑M1/1‑45 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:1650562‑M1/1‑45 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat < 1:109991‑M1/49‑6 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat > 1:1960459‑M1/1‑44 (MQ=255) tttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat > 1:338507‑M1/1‑43 (MQ=255) tCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatga < 1:417642‑M1/48‑8 (MQ=255) cATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat < 1:269862‑M1/48‑9 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc > 1:854359‑M1/1‑39 (MQ=255) tGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcc > 1:1675505‑M1/1‑38 (MQ=255) cGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat < 1:1134098‑M1/49‑15 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat > 1:497017‑M1/1‑34 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat > 1:1401579‑M1/1‑34 (MQ=255) gTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaa < 1:1578349‑M1/49‑18 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga > 1:225828‑M1/1‑29 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:2039765‑M1/48‑20 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga > 1:70265‑M1/1‑29 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:1286253‑M1/47‑22 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg < 1:143412‑M1/48‑25 (MQ=255) gCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca > 1:1161200‑M1/1‑23 (MQ=255) gCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca > 1:1705723‑M1/1‑23 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:880030‑M1/49‑28 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat > 1:1750503‑M1/1‑22 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:1239158‑M1/49‑28 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:1436324‑M1/1‑20 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:665326‑M1/1‑20 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag > 1:1854056‑M1/1‑18 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag < 1:1332230‑M1/49‑32 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag > 1:461646‑M1/1‑18 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctgg > 1:194271‑M1/1‑14 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctgg > 1:758218‑M1/1‑14 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:1807228‑M1/1‑13 (MQ=255) atCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca > 1:1722464‑M1/1‑11 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat < 1:715862‑M1/49‑40 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc < 1:119202‑M1/49‑42 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc > 1:1195342‑M1/1‑8 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:1838995‑M1/49‑44 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag < 1:1230367‑M1/49‑46 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:212668‑M1/48‑45 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagca < 1:1285627‑M1/49‑48 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:313593‑M1/1‑2 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:1454354‑M1/1‑1 (MQ=255) | GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCA > NC_000913/3761944‑3762040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |