| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 213730 | 29 (1.070) | 69 (3.520) +AGGACTTCTTGAA |
3/70 | 2.1 | 77.0% | coding (203/255 nt) | rof | modulator of Rho‑dependent transcription termination |
| ? | NC_000913 | 3958648 = | 28 (1.030) | coding (679/1476 nt) | ilvC | ketol‑acid reductoisomerase (NADP(+)) | |||||
GGTGGCTAAAGCTGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/213713‑213730‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTATGTTGCAGGCTGGCTCTCT > NC_000913/3958648‑3958670 ||||||||||||| taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1665796/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:522662/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1860372/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:859920/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:533990/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1208203/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:671701/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1314855/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:1329119/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:133591/3‑48taTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG > 1:637785/3‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:242696/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:340328/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:524405/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:1442738/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:1433900/2‑48 aTGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa > 1:1167775/2‑48 aTGGCTAAAGCTGGTAAAGGAATTCTTGAAGGTACGTTGCAGGCTGGCa > 1:276210/2‑48 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:1675971/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:649503/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:89027/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:1626217/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:446383/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:480439/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:516526/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac < 1:523256/49‑3 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:1502520/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:1861837/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCac > 1:1146668/1‑47 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:1705282/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:28093/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:1046774/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:1745101/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:112600/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCa < 1:110091/48‑2 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:1031564/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:702348/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGC < 1:2095246/47‑1 TGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAAGCTGGC < 1:1607259/47‑1 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:612156/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:885209/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:1707428/1‑49 GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT > 1:1172567/1‑49 tCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:1100622/2‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:986181/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:1342428/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:1561096/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:1563015/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:1569515/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt > 1:405751/1‑48 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:1629124/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTt < 1:180900/49‑2 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:1608860/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:1568679/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:228334/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:1948034/48‑1 GCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:736990/48‑1 GCTAAAGCTCGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT < 1:1220092/48‑1 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:980069/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:1104346/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:876692/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1131384/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:529298/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1360839/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:1423052/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1455134/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1495596/1‑47 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc < 1:418652/49‑3 CTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTtc > 1:1998917/1‑47 ||||||||||||| GGTGGCTAAAGCTGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/213713‑213730‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTATGTTGCAGGCTGGCTCTCT > NC_000913/3958648‑3958670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |