| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 213730 | 29 (1.070) | 69 (3.520) +AGGACTTCTTGAA |
3/70 | 2.1 | 77.0% | coding (203/255 nt) | rof | modulator of Rho‑dependent transcription termination |
| ? | NC_000913 | 3958648 = | 28 (1.030) | coding (679/1476 nt) | ilvC | ketol‑acid reductoisomerase (NADP(+)) | |||||
ATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCGACGACCA > NC_000913/213683‑213778 | aTTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt > 1:2036860/1‑49 (MQ=255) ttCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtt > 1:522301/1‑49 (MQ=255) cGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt < 1:1999707/48‑1 (MQ=255) cGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt > 1:1116995/1‑48 (MQ=255) accaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGAc < 1:463108/49‑1 (MQ=255) accaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGAc < 1:361347/49‑1 (MQ=255) ccaccGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACg < 1:990024/49‑1 (MQ=255) accGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACg > 1:954095/1‑47 (MQ=255) accGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACg > 1:1621135/1‑47 (MQ=255) cGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGc > 1:1054158/1‑49 (MQ=255) gTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCt < 1:559600/49‑1 (MQ=255) gTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCt > 1:574652/1‑49 (MQ=255) ccGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTcgc < 1:198101/49‑1 (MQ=255) ccGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTcgc > 1:624727/1‑49 (MQ=255) ccGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTcg < 1:477907/48‑1 (MQ=255) cGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTcgcg > 1:151331/1‑49 (MQ=255) tCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGtt < 1:551678/48‑1 (MQ=255) cGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCg > 1:529849/1‑49 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:533990‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:522662‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:637785‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:133591‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1329119‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1314855‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1665796‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:671701‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1208203‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:1860372‑M1/3‑18 (MQ=255) tatggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctgg > 1:859920‑M1/3‑18 (MQ=255) ggTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGc > 1:856174/1‑48 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:340328‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:242696‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:524405‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:1167775‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:1442738‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca > 1:1433900‑M1/2‑17 (MQ=255) atgGCTAAAGCTGGTAAaggaattcttgaaggtacgttgcaggctggca > 1:276210‑M1/2‑17 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:89027‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:1146668‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:1861837‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:446383‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:523256‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:1675971‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:649503‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:1626217‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:480439‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac < 1:516526‑M1/49‑34 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcac > 1:1502520‑M1/1‑16 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:1046774‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:110091‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:1745101‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:28093‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:112600‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggca < 1:1705282‑M1/48‑33 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:702348‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:1031564‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggc < 1:2095246‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaagctggc < 1:1607259‑M1/47‑32 (MQ=255) tGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAg < 1:280352/49‑1 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:1172567‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:885209‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:612156‑M1/1‑15 (MQ=255) ggCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact > 1:1707428‑M1/1‑15 (MQ=255) tctAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:1100622‑M1/2‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:1563015‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:1342428‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:1561096‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:1569515‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:180900‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:986181‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt > 1:405751‑M1/1‑14 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcactt < 1:1629124‑M1/49‑36 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:1608860‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:736990‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:1568679‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:1948034‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:228334‑M1/48‑35 (MQ=255) gCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGc < 1:574370/48‑1 (MQ=255) gCTAAAGCTCGTAAaggacttcttgaaggtacgttgcaggctggcact < 1:1220092‑M1/48‑35 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1455134‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1495596‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:1423052‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:418652‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1360839‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:529298‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:1104346‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:876692‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc < 1:980069‑M1/49‑37 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1998917‑M1/1‑13 (MQ=255) cTAAAGCTGGTAAaggacttcttgaaggtacgttgcaggctggcacttc > 1:1131384‑M1/1‑13 (MQ=255) aaaGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGcc > 1:1459202/1‑49 (MQ=255) aaGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGcc < 1:1878465/48‑1 (MQ=255) aaGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCt > 1:705059/1‑49 (MQ=255) aGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTc < 1:1031501/49‑1 (MQ=255) cTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcga > 1:1611832/1‑49 (MQ=255) gTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcgacg < 1:1237383/48‑1 (MQ=255) gTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTcgac < 1:1291752/47‑1 (MQ=255) aTTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCGACGACCa < 1:457479/49‑1 (MQ=255) | ATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGCCTCGACGACCA > NC_000913/213683‑213778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |