| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 213730 | 29 (1.070) | 69 (3.520) +AGGACTTCTTGAA |
3/70 | 2.1 | 77.0% | coding (203/255 nt) | rof | modulator of Rho‑dependent transcription termination |
| ? | NC_000913 | 3958648 = | 28 (1.030) | coding (679/1476 nt) | ilvC | ketol‑acid reductoisomerase (NADP(+)) | |||||
GTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGG > NC_000913/3958600‑3958693 | gTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCg > 1:2010562/1‑49 (MQ=255) cGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTAt > 1:1072579/1‑49 (MQ=255) gAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGt > 1:728608/1‑49 (MQ=255) aGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTg > 1:800836/1‑49 (MQ=255) gTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGc < 1:1801671/49‑1 (MQ=255) aaaTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAg < 1:704680/48‑1 (MQ=255) aaTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggc > 1:704631/1‑49 (MQ=255) aaTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggc > 1:1420471/1‑49 (MQ=255) aTCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggct < 1:1210092/49‑1 (MQ=255) cTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAggctgg > 1:329308/1‑49 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:522662‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1665796‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1860372‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:133591‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1329119‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1314855‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:637785‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:1208203‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:859920‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:671701‑M2/32‑48 (MQ=255) tatggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctgg > 1:533990‑M2/32‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:1167775‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:242696‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:340328‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:1442738‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:524405‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca > 1:1433900‑M2/31‑48 (MQ=255) atggctaaagctggtaaaggaattcttgaaGGTACGTTGCaggctggca > 1:276210‑M2/31‑48 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac < 1:523256‑M2/20‑3 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:89027‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac < 1:1675971‑M2/20‑3 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:1626217‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:1146668‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:1861837‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:1502520‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac < 1:516526‑M2/20‑3 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac < 1:649503‑M2/20‑3 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac > 1:446383‑M2/30‑47 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGcaggctggcac < 1:480439‑M2/20‑3 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:1046774‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:28093‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:1745101‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:1705282‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:112600‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCaggctggca < 1:110091‑M2/19‑2 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc < 1:2095246‑M2/18‑1 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc < 1:702348‑M2/18‑1 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAggctggc < 1:1031564‑M2/18‑1 (MQ=255) tggctaaagctggtaaaggacttcttgaaGGTACGTTGCAagctggc < 1:1607259‑M2/18‑1 (MQ=255) aCCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctc > 1:1513659/1‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:1707428‑M2/29‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:885209‑M2/29‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:1172567‑M2/29‑49 (MQ=255) ggctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact > 1:612156‑M2/29‑49 (MQ=255) tctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:1100622‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:986181‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt < 1:1342428‑M2/22‑2 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:405751‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:1561096‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt < 1:1629124‑M2/22‑2 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt > 1:1563015‑M2/28‑48 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt < 1:180900‑M2/22‑2 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGgcactt < 1:1569515‑M2/22‑2 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:228334‑M2/21‑1 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:1608860‑M2/21‑1 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:736990‑M2/21‑1 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:1568679‑M2/21‑1 (MQ=255) gctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:1948034‑M2/21‑1 (MQ=255) gctaaagctcgtaaaggacttcttgaaGGTACGTTGCAGGCTGGcact < 1:1220092‑M2/21‑1 (MQ=255) cTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGctctc > 1:221290/1‑49 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:529298‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:980069‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:876692‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:1104346‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:1131384‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:1360839‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:1423052‑M2/23‑3 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:1495596‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:1998917‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc > 1:1455134‑M2/27‑47 (MQ=255) ctaaagctggtaaaggacttcttgaaGGTACGTTGCAGGCTggcacttc < 1:418652‑M2/23‑3 (MQ=255) gATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTctg > 1:1370830/1‑49 (MQ=255) aTGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTctgc > 1:4184/1‑49 (MQ=255) tGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTctgct < 1:139966/49‑1 (MQ=255) tGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTctgct > 1:299220/1‑49 (MQ=255) cGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGc > 1:1703683/1‑49 (MQ=255) gAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCt > 1:519225/1‑49 (MQ=255) gAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCt > 1:2010920/1‑49 (MQ=255) gAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCt > 1:1158089/1‑49 (MQ=255) gAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCt > 1:1993266/1‑49 (MQ=255) aGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCtt < 1:158557/49‑1 (MQ=255) gCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTc > 1:50918/1‑49 (MQ=255) cAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCg < 1:1510166/49‑1 (MQ=255) ccATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGAc > 1:710715/1‑47 (MQ=255) cATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAg > 1:1907485/1‑49 (MQ=255) cTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtgg > 1:695680/1‑49 (MQ=255) tgCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtggtg < 1:1304448/48‑1 (MQ=255) ggTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtggtgg > 1:1461741/1‑46 (MQ=255) ggTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCtggtgg > 1:1647744/1‑46 (MQ=255) | GTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTCTGCTGTGCTTCGACAAGCTGGTGG > NC_000913/3958600‑3958693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |