New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 924845	27 (1.000)	6 (0.240)	5/88	1.9	20.4%	coding (1582/2277 nt)	clpA	ATP‑dependent Clp protease ATP‑binding subunit ClpA
	?	NC_000913	924874 =	22 (0.890)					coding (1611/2277 nt)	clpA	ATP‑dependent Clp protease ATP‑binding subunit ClpA

GCTTTGGGCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/924794‑924845 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGCTGACTGATGCG  >  NC_000913/924874‑924919                                                                                                    GCTTTGGGCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAAC                                                   >  1:223787/1‑49   TTTGGGCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGC                                                 >  1:1687141/1‑49      GGGCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCTC                                              >  1:1090320/1‑49              AGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCTCCGGGATAC                                      <  1:1749531/49‑1                  TCTGCGCTTTGATATGTCCGAGTATATGGAACGCCTCCGGGATACGTTG                                  >  1:760936/1‑49                   CTGCGCTTTGATATGTCCGAGTTTATGGAACGCCTCCGGGATACGTTG                                  <  1:1057593/48‑1                                         ATATGGAACGCCTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGCT            >  1:119848/1‑48                                         ATATGGAACGCCTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGCT            >  1:1379685/1‑48                                                  GCCTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGCTGACTGATGCG  <  1:1347694/49‑1                                                  GCCTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGCTGACTGATGCG  <  1:1423524/49‑1                                                                                                    GCTTTGGGCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/924794‑924845 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGCTGACTGATGCG  >  NC_000913/924874‑924919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.