| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 924845 | 27 (1.000) | 6 (0.240) | 5/88 | 1.9 | 20.4% | coding (1582/2277 nt) | clpA | ATP‑dependent Clp protease ATP‑binding subunit ClpA |
| ? | NC_000913 | 924874 = | 22 (0.890) | coding (1611/2277 nt) | clpA | ATP‑dependent Clp protease ATP‑binding subunit ClpA | |||||
GGGCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTG > NC_000913/924799‑924893 | gggCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCtc > 1:1090320‑M1/1‑47 (MQ=255)gggCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCa > 1:384629/1‑48 (MQ=255) ggCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCAt < 1:1181482/48‑1 (MQ=255) gCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCATAc < 1:1882477/49‑1 (MQ=255) cATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCATAcc > 1:26659/1‑49 (MQ=255) cATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCATAcc < 1:260343/49‑1 (MQ=255) tGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCATACCGt > 1:69005/1‑48 (MQ=255) tGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCATACCGt > 1:1925859/1‑48 (MQ=255) aGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCtccgggatac < 1:1749531‑M1/49‑11 (MQ=255) tCTGCGCTTTGATATGTCCGAGTATATGGAACGCCtccgggatacgttg > 1:760936‑M1/1‑35 (MQ=255) cTGCGCTTTGATATGTCCGAGTTTATGGAACGCCtccgggatacgttg < 1:1057593‑M1/48‑15 (MQ=255) gcgcTTTGATATGTCCGAGTATATGGAACGCCATACCGTCAGCCGTCt > 1:513882/1‑48 (MQ=255) cgcTTTGATATGTCCGAGTATATGGAACGCCATACCGTCAGCCGTc < 1:1009214/46‑1 (MQ=255) cgcTTTGATATGTCCGAGTATATGGAACGCCATACCGTCAGCCGTCtt < 1:285442/48‑1 (MQ=255) cgcTTTGATATGTCCGAGTATATGGAACGCCATACCGTCAGCCGTCt < 1:1463622/47‑1 (MQ=255) cgcTTTGATATGTCCGAGTATATGGAACGCCATACCGTCAGCCGTCTTa < 1:2019492/49‑1 (MQ=255) ttGATATGTCCGAGTATATGGAACGCCATACCGTCAGCCGTCTTATTgg > 1:804707/1‑49 (MQ=255) tGATATGTCCGAGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGt > 1:1468284/1‑49 (MQ=255) atGTCCGAGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTgcgc > 1:33746/1‑49 (MQ=255) tCCGAGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCt < 1:24162/48‑1 (MQ=255) gAGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCgg > 1:2094048/1‑49 (MQ=255) aGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCggg < 1:1053721/49‑1 (MQ=255) aGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCggg < 1:356533/49‑1 (MQ=255) atatGGAACGCCtccgggatacgttggttttgatcagggcggtttgct > 1:1379685‑M1/1‑12 (MQ=255) atatGGAACGCCtccgggatacgttggttttgatcagggcggtttgct > 1:119848‑M1/1‑12 (MQ=255) atatGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATa > 1:1375862/1‑49 (MQ=255) tatGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATAc > 1:1801895/1‑49 (MQ=255) atGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACg > 1:1454057/1‑49 (MQ=255) tGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACg < 1:14536/48‑1 (MQ=255) tGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGt < 1:695762/49‑1 (MQ=255) gAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGtt < 1:405108/48‑1 (MQ=255) aaCGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGTTgg > 1:428199/1‑49 (MQ=255) gCCtccgggatacgttggttttgatcagggcggtttgctgactgatgcg < 1:1423524‑M1/49‑47 (MQ=255) gCCtccgggatacgttggttttgatcagggcggtttgctgactgatgcg < 1:1347694‑M1/49‑47 (MQ=255) cATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTg < 1:1196242/49‑1 (MQ=255) | GGGCATTGAGCTTCTGCGCTTTGATATGTCCGAGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTG > NC_000913/924799‑924893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |