| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 924845 | 27 (1.000) | 6 (0.240) | 5/88 | 1.9 | 20.4% | coding (1582/2277 nt) | clpA | ATP‑dependent Clp protease ATP‑binding subunit ClpA |
| ? | NC_000913 | 924874 = | 22 (0.890) | coding (1611/2277 nt) | clpA | ATP‑dependent Clp protease ATP‑binding subunit ClpA | |||||
TCCGAGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGCTGACTGATGCG > NC_000913/924827‑924919 | tCCGAGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCt < 1:24162/48‑1 (MQ=255)gggcattgagcttctgcgctttgatatgtccgagtatatggaacgccTc > 1:1090320‑M2/48‑49 (MQ=255) gAGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCgg > 1:2094048/1‑49 (MQ=255) aGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCggg < 1:1053721/49‑1 (MQ=255) aGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCggg < 1:356533/49‑1 (MQ=255) atatGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATa > 1:1375862/1‑49 (MQ=255) tatGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATAc > 1:1801895/1‑49 (MQ=255) agcttctgcgctttgatatgtccgagtatatggaacgccTCCGGGATAc < 1:1749531‑M2/10‑1 (MQ=255) atGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACg > 1:1454057/1‑49 (MQ=255) tGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACg < 1:14536/48‑1 (MQ=255) tGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGt < 1:695762/49‑1 (MQ=255) tctgcgctttgatatgtccgagtatatggaacgccTCCGGGATACGTTg > 1:760936‑M2/36‑49 (MQ=255) gAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGtt < 1:405108/48‑1 (MQ=255) ctgcgctttgatatgtccgagtttatggaacgccTCCGGGATACGTTg < 1:1057593‑M2/14‑1 (MQ=255) aaCGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGTTgg > 1:428199/1‑49 (MQ=255) cATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTg < 1:1196242/49‑1 (MQ=255) ccGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTGATCa < 1:697203/49‑1 (MQ=255) aGCCGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCg > 1:390586/1‑49 (MQ=255) aGCCGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCg < 1:927729/49‑1 (MQ=255) aGCCGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCg > 1:164760/1‑49 (MQ=255) ccGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCGGt > 1:1737155/1‑49 (MQ=255) cGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCGGtt > 1:1406660/1‑49 (MQ=255) gTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCGGttt < 1:532791/49‑1 (MQ=255) gTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCGGttt < 1:696885/49‑1 (MQ=255) atatggaacgccTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGct > 1:1379685‑M2/13‑48 (MQ=255) atatggaacgccTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGct > 1:119848‑M2/13‑48 (MQ=255) ttGGTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGctgac < 1:1972610/49‑1 (MQ=255) gTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGctgactga > 1:1753967/1‑49 (MQ=255) gccTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGCTGACTGATGCg < 1:1423524‑M2/46‑1 (MQ=255) gccTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGCTGACTGATGCg < 1:1347694‑M2/46‑1 (MQ=255) | TCCGAGTATATGGAACGCCATACCGTCAGCCGTCTTATTGGTGCGCCTCCGGGATACGTTGGTTTTGATCAGGGCGGTTTGCTGACTGATGCG > NC_000913/924827‑924919 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |