| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 153 [0] | [0] 151 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 148 (1.390) | 70/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 153 total aligned reads displayed.
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979330‑1979378 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT < 1:1278098/50‑1AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:8117499/1‑50 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC < 1:88484/50‑1 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC < 1:185795/50‑1 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC < 1:6607631/50‑1 GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:5305533/1‑50 ACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:387549/1‑50 ACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:4939861/1‑50 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT < 1:1225429/50‑1 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT < 1:3778107/50‑1 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT < 1:5609884/50‑1 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:5252681/1‑49 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 1:1637149/1‑50 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC > 1:4041804/1‑50 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:5507314/50‑1 CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG > 1:8148150/1‑50 CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG > 1:4449036/1‑50 CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG > 1:3367400/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:6550693/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:3371743/1‑50 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCT < 1:7697739/50‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCT < 1:1877252/50‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCT < 1:4670424/50‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:2209734/1‑49 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA < 1:6427749/50‑1 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA < 1:6190247/50‑1 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:1760296/1‑48 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC < 1:4791249/50‑1 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:4965143/1‑49 TTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:839486/1‑48 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA < 1:6929762/48‑1 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA < 1:3579494/48‑1 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA < 1:4539387/48‑1 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:4700870/1‑49 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC < 1:2886648/49‑1 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:205501/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA < 1:4149310/50‑1 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA < 1:3274074/50‑1 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA < 1:7960045/50‑1 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA > 1:4333627/1‑50 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA > 1:958156/1‑50 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA > 1:363608/1‑50 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG < 1:5736407/50‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG < 1:1534914/50‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG < 1:2672035/50‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:7800654/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:2614253/1‑49 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:4887557/1‑49 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA < 1:3725131/48‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA < 1:8217031/50‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA < 1:7990440/50‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG > 1:3523790/1‑49 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAA < 1:1755129/50‑1 TATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:2975707/1‑50 TATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:2004078/1‑50 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA < 1:2231659/49‑1 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:3123486/1‑49 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA < 1:437740/50‑1 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:4318594/1‑48 TAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:1562760/1‑50 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:6208839/1‑49 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:6586208/1‑49 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGA < 1:7644488/50‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG < 1:291808/49‑1 ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA < 1:3236805/50‑1 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:23231/50‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATA < 1:5042128/50‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT > 1:5445323/1‑49 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT > 1:2864444/1‑49 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA > 1:7716782/1‑50 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA < 1:3980565/50‑1 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA > 1:4808318/1‑50 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA > 1:6951767/1‑50 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA > 1:6898126/1‑50 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC > 1:1046024/1‑50 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:7156728/49‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:3487256/49‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:3848856/49‑1 CGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG > 1:4742814/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA < 1:6107857/49‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA > 1:7389959/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA > 1:1307383/1‑49 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA < 1:3053559/50‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA < 1:5072135/50‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > 1:8168793/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGTAATAATCCAAAT > 1:4519840/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT < 1:6379930/50‑1 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT < 1:2950042/50‑1 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG < 1:1661533/50‑1 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG < 1:6123889/50‑1 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG < 1:4556443/50‑1 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG > 1:8218394/1‑49 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA < 1:5255256/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:3884146/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:6753229/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:4224711/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:3136000/50‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG < 1:4551534/50‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > 1:7604551/1‑50 TCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > 1:4602235/1‑50 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979330‑1979378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |