| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 153 [0] | [0] 151 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 148 (1.390) | 70/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 151 total aligned reads displayed.
TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT > NC_000913/1979281‑1979379 | agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:88484‑M2/1‑1 (MQ=255) gacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcg > 1:5305533‑M2/49‑50 (MQ=255) gacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcg > 1:2292238‑M2/49‑50 (MQ=255) acatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:1322355‑M2/48‑50 (MQ=255) acatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:4939861‑M2/48‑50 (MQ=255) acatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:1575601‑M2/48‑50 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgct < 1:1225429‑M2/4‑1 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:5252681‑M2/47‑49 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta > 1:7438059‑M2/46‑50 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta > 1:6427787‑M2/46‑50 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac > 1:4041804‑M2/45‑50 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:5507314‑M2/6‑1 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:4449036‑M2/44‑50 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:3367400‑M2/44‑50 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:8148150‑M2/44‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:3371743‑M2/43‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:2357158‑M2/43‑50 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 1:1877252‑M2/9‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 1:4670424‑M2/9‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 1:7697739‑M2/9‑1 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:6427749‑M2/10‑1 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:1760296‑M2/41‑48 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc < 1:4791249‑M2/12‑1 (MQ=255) tttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc > 1:4965143‑M2/38‑49 (MQ=255) ttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc > 1:839486‑M2/37‑48 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:733822‑M2/36‑50 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaa < 1:5522189‑M2/14‑1 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagca < 1:6929762‑M2/13‑1 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagca < 1:4539387‑M2/13‑1 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagca < 1:3579494‑M2/13‑1 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc > 1:4700870‑M2/34‑49 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagca > 1:205501‑M2/33‑49 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAgtaagcaa < 1:1914154‑M2/18‑1 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaa < 1:4149310‑M2/19‑1 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:4333627‑M2/30‑50 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:958156‑M2/30‑50 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa < 1:2776246‑M2/21‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa < 1:3725131‑M2/21‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:4887557‑M2/28‑49 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:2614253‑M2/28‑49 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:7800654‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg < 1:5736407‑M2/23‑1 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg > 1:3523790‑M2/27‑49 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa < 1:7990440‑M2/24‑1 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa < 1:8217031‑M2/24‑1 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa < 1:2200894‑M2/24‑1 (MQ=255) tattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:7720567‑M2/25‑50 (MQ=255) tattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:2975707‑M2/25‑50 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa < 1:2231659‑M2/26‑1 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:3123486‑M2/24‑49 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:4318594‑M2/23‑48 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACa < 1:437740‑M2/28‑1 (MQ=255) taaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:1562760‑M2/22‑50 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:1821968‑M2/21‑49 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:6586208‑M2/21‑49 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:6208839‑M2/21‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg < 1:291808‑M2/30‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 1:3236805‑M2/32‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 1:2905329‑M2/32‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 1:3619021‑M2/32‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:6819915‑M2/34‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:5042128‑M2/34‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:5445323‑M2/17‑49 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:3769844‑M2/17‑49 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:2864444‑M2/17‑49 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa > 1:4808318‑M2/16‑50 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:3980565‑M2/35‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat < 1:7156728‑M2/36‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat < 1:3487256‑M2/36‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat < 1:3848856‑M2/36‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:1046024‑M2/14‑50 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc < 1:3872862‑M2/37‑1 (MQ=255) cgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg > 1:4742814‑M2/12‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 1:1307383‑M2/11‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 1:7981426‑M2/11‑49 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:8168793‑M2/10‑50 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 1:5072135‑M2/41‑1 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:659237‑M2/10‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGTAATAATCCAAAt > 1:4519840‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:6163313‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt < 1:6229728‑M2/42‑1 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:1661533‑M2/44‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg < 1:6123889‑M2/45‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg < 1:4556443‑M2/45‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:8218394‑M2/6‑49 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa < 1:5255256‑M2/46‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:2953631‑M2/47‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:60217‑M2/47‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:3884146‑M2/47‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:4224711‑M2/47‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:3143435‑M2/47‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:6753229‑M2/47‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:4551534‑M2/48‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:1744820‑M2/48‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:7674442‑M2/48‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg > 1:7604551‑M2/3‑50 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg > 1:6948001‑M2/3‑50 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:3065209‑M2/49‑1 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt > 1:4602235‑M2/2‑50 (MQ=255) cgctacgctaGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt > 1:3941854/1‑50 (MQ=255) | TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT > NC_000913/1979281‑1979379 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |