| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 153 [0] | [0] 151 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 148 (1.390) | 70/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 153 total aligned reads displayed.
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962516‑1962614 | aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT < 1:1278098‑M1/50‑1 (MQ=255)aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:8117499‑M1/1‑50 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:88484‑M1/50‑2 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:185795‑M1/50‑2 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:6607631‑M1/50‑2 (MQ=255) gACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:5305533‑M1/1‑48 (MQ=255) aCATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:387549‑M1/1‑47 (MQ=255) aCATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:4939861‑M1/1‑47 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgct < 1:1225429‑M1/50‑5 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgct < 1:3778107‑M1/50‑5 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgct < 1:5609884‑M1/50‑5 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:5252681‑M1/1‑46 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:1637149‑M1/1‑45 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac > 1:4041804‑M1/1‑44 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:5507314‑M1/50‑7 (MQ=255) cGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg > 1:8148150‑M1/1‑43 (MQ=255) cGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg > 1:4449036‑M1/1‑43 (MQ=255) cGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg > 1:3367400‑M1/1‑43 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:6550693‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:3371743‑M1/1‑42 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:7697739‑M1/50‑10 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:1877252‑M1/50‑10 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:4670424‑M1/50‑10 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:2209734‑M1/1‑41 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:6427749‑M1/50‑11 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:6190247‑M1/50‑11 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:1760296‑M1/1‑40 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc < 1:4791249‑M1/50‑13 (MQ=255) tttttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc > 1:4965143‑M1/1‑37 (MQ=255) ttttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc > 1:839486‑M1/1‑36 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagca < 1:6929762‑M1/48‑14 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagca < 1:3579494‑M1/48‑14 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagca < 1:4539387‑M1/48‑14 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc > 1:4700870‑M1/1‑33 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc < 1:2886648‑M1/49‑17 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagca > 1:205501‑M1/1‑32 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaa < 1:4149310‑M1/50‑20 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaa < 1:3274074‑M1/50‑20 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:7960045‑M1/50‑21 (MQ=255) tGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa > 1:4333627‑M1/1‑29 (MQ=255) tGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa > 1:958156‑M1/1‑29 (MQ=255) tGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa > 1:363608‑M1/1‑29 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:5736407‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:1534914‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:2672035‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:7800654‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:2614253‑M1/1‑27 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:4887557‑M1/1‑27 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa < 1:3725131‑M1/48‑22 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga < 1:8217031‑M1/50‑25 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga < 1:7990440‑M1/50‑25 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg > 1:3523790‑M1/1‑26 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaa < 1:1755129‑M1/50‑26 (MQ=255) tattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:2975707‑M1/1‑24 (MQ=255) tattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:2004078‑M1/1‑24 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa < 1:2231659‑M1/49‑27 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:3123486‑M1/1‑23 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaaca < 1:437740‑M1/50‑29 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:4318594‑M1/1‑22 (MQ=255) taAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:1562760‑M1/1‑21 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:6208839‑M1/1‑20 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:6586208‑M1/1‑20 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagga < 1:7644488‑M1/50‑32 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg < 1:291808‑M1/49‑31 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa < 1:3236805‑M1/50‑33 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:23231‑M1/50‑34 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaata < 1:5042128‑M1/50‑35 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:5445323‑M1/1‑16 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:2864444‑M1/1‑16 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa > 1:7716782‑M1/1‑15 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:3980565‑M1/50‑36 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa > 1:4808318‑M1/1‑15 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa > 1:6951767‑M1/1‑15 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa > 1:6898126‑M1/1‑15 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc > 1:1046024‑M1/1‑13 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat < 1:7156728‑M1/49‑37 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat < 1:3487256‑M1/49‑37 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat < 1:3848856‑M1/49‑37 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg > 1:4742814‑M1/1‑11 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga < 1:6107857‑M1/49‑40 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga > 1:7389959‑M1/1‑10 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga > 1:1307383‑M1/1‑10 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa < 1:3053559‑M1/50‑42 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa < 1:5072135‑M1/50‑42 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:8168793‑M1/1‑9 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacagtaataatccaaat > 1:4519840‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat < 1:6379930‑M1/50‑43 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat < 1:2950042‑M1/50‑43 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 1:1661533‑M1/50‑45 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg < 1:6123889‑M1/50‑46 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg < 1:4556443‑M1/50‑46 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg > 1:8218394‑M1/1‑5 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga < 1:5255256‑M1/50‑47 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:3884146‑M1/50‑48 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:6753229‑M1/50‑48 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:4224711‑M1/50‑48 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:3136000‑M1/50‑48 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg < 1:4551534‑M1/50‑49 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg > 1:7604551‑M1/1‑2 (MQ=255) tcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt > 1:4602235‑M1/1‑1 (MQ=255) | AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962516‑1962614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |