| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 99 [0] | [0] 102 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 98 (0.900) | 56/98 | 0.0 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
CCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTT > NC_000913/3090297‑3090395 | ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg < 1:5064057/49‑1 (MQ=255)ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc > 1:3236815‑M1/1‑49 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc < 1:670143‑M1/50‑3 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:1874172‑M1/1‑48 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct < 1:576084‑M1/50‑4 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct < 1:3319146‑M1/50‑4 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct < 1:1598302‑M1/50‑4 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:4157696‑M1/1‑47 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:4731216‑M1/1‑47 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:4562158‑M1/1‑46 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:5460466‑M1/1‑46 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:6103913‑M1/1‑46 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:2830043‑M1/1‑46 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:8085372‑M1/50‑6 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:2425805‑M1/50‑6 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:5605494‑M1/50‑7 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTAGTTTTAACACGGAG‑AAGTGcctaca < 1:15184‑M1/50‑7 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact < 1:6219533‑M1/50‑9 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:5399937‑M1/50‑11 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag > 1:175321‑M1/1‑40 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:6006714‑M1/50‑11 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag > 1:4994505‑M1/1‑40 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:1084698‑M1/1‑39 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:5625642‑M1/1‑37 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 1:639270‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 1:6390635‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 1:7184706‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:4821411‑M1/48‑12 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:1246469‑M1/48‑12 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:7809496‑M1/48‑12 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:7823031‑M1/1‑36 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg < 1:2320585‑M1/49‑14 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga < 1:3302978‑M1/50‑16 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga < 1:2878478‑M1/50‑16 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:7727033‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga < 1:2711935‑M1/50‑16 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga < 1:5530969‑M1/50‑16 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg < 1:7877881‑M1/49‑15 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg < 1:1753887‑M1/49‑15 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat > 1:2474682‑M1/1‑34 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:3114221‑M1/1‑33 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:5227508‑M1/1‑33 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:4382924‑M1/1‑33 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:4086194‑M1/1‑33 (MQ=255) aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc > 1:5762393‑M1/1‑32 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc < 1:4549975‑M1/49‑19 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt < 1:2215277‑M1/48‑18 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:456338‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:4621026‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:5966887‑M1/50‑21 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:6102010‑M1/50‑21 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:2604726‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:6287128‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:5227348‑M1/1‑30 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:817999‑M1/50‑22 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:5251919‑M1/50‑22 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:6689548‑M1/1‑28 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:6222029‑M1/1‑28 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:4253714‑M1/1‑28 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:698698‑M1/49‑23 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:6729132‑M1/1‑25 (MQ=255) ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:2861306‑M1/1‑24 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:7622299‑M1/50‑28 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt > 1:1373090‑M1/1‑23 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:1614138‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:6067445‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt < 1:3898821‑M1/48‑26 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa > 1:2453246‑M1/1‑22 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa < 1:3703153‑M1/50‑29 (MQ=255) tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac > 1:1114458‑M1/1‑21 (MQ=255) tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac > 1:7324119‑M1/1‑21 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:2541761‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:5293890‑M1/1‑19 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:4371301‑M1/50‑33 (MQ=255) tttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:4644164‑M1/1‑17 (MQ=255) tttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:661104‑M1/1‑17 (MQ=255) tttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:3424646‑M1/1‑17 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta > 1:3916501‑M1/1‑16 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc > 1:7579605‑M1/1‑14 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc < 1:4885671‑M1/50‑38 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc < 1:1209052‑M1/50‑38 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:664080‑M1/49‑37 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc < 1:6938167‑M1/50‑39 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc < 1:510879‑M1/50‑39 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc > 1:100737‑M1/1‑12 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca < 1:256286‑M1/50‑40 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca < 1:598852‑M1/50‑40 (MQ=255) agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg < 1:5004538‑M1/48‑44 (MQ=255) aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta > 1:2260364‑M1/1‑5 (MQ=255) aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta > 1:1655020‑M1/1‑5 (MQ=255) aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta < 1:3164476‑M1/50‑46 (MQ=255) aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac < 1:6015515‑M1/50‑47 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtaca < 1:3015641‑M1/50‑48 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtaca < 1:7616945‑M1/50‑48 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtaca < 1:1637204‑M1/50‑48 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtac > 1:5718680‑M1/1‑3 (MQ=255) tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa > 1:6936912‑M1/1‑2 (MQ=255) tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa > 1:5474022‑M1/1‑2 (MQ=255) gcctacactagcgggattctttttgttaacccctaccccacgcgtacaac > 1:5102050‑M1/1‑1 (MQ=255) | CCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTT > NC_000913/3090297‑3090395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |