| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 154 [0] | [0] 159 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 114 (1.400) +CAGATAATTCAA |
60/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 159 total aligned reads displayed.
GATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223044‑1223142 | ctcctgattttagtaatctcttgatgctaagaactatcagataattcaaa < 1:1792958‑M2/1‑1 (MQ=255) tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:24737‑M2/49‑50 (MQ=255) cctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc > 1:896428‑M2/48‑50 (MQ=255) cctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc > 1:5761501‑M2/48‑50 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAgct < 1:3299365‑M2/4‑2 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc < 1:580115‑M2/3‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc < 1:4626849‑M2/3‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGCg < 1:517620‑M2/4‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGt < 1:7048796‑M2/5‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGt < 1:6622979‑M2/5‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg < 1:6989665‑M2/7‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg < 1:7772688‑M2/6‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg < 1:7059500‑M2/6‑1 (MQ=255) ttttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGc > 1:4942149‑M2/43‑50 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtg > 1:2522681‑M2/41‑50 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtg > 1:4128085‑M2/41‑50 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:2946945‑M2/9‑1 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt > 1:5285921‑M2/40‑50 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt > 1:3256137‑M2/40‑50 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt < 1:6135684‑M2/11‑1 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt > 1:5754209‑M2/39‑49 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgtg < 1:3580099‑M2/12‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgtg < 1:6302883‑M2/12‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgtg < 1:3509404‑M2/12‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtga > 1:5600026‑M2/38‑50 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtga > 1:621917‑M2/38‑50 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat < 1:7572159‑M2/14‑1 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat < 1:2744011‑M2/14‑1 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat < 1:6192340‑M2/14‑1 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat < 1:791515‑M2/14‑1 (MQ=255) tctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:4691968‑M2/34‑49 (MQ=255) ctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:455652‑M2/33‑48 (MQ=255) ctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:5114392‑M2/33‑48 (MQ=255) ctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:2595728‑M2/33‑48 (MQ=255) tcttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:4754264‑M2/32‑50 (MQ=255) tcttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:2140746‑M2/32‑50 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:3524171‑M2/31‑49 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:663984‑M2/31‑49 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:4013804‑M2/31‑49 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:1965323‑M2/31‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTgatgat < 1:1974488‑M2/17‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg > 1:7669341‑M2/30‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:8217610‑M2/19‑1 (MQ=255) tgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa > 1:1133933‑M2/29‑50 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa < 1:5885600‑M2/22‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa < 1:142823‑M2/22‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:3019845‑M2/28‑50 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:1759889‑M2/27‑49 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa > 1:3643170‑M2/26‑50 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa > 1:5840295‑M2/26‑50 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa > 1:4818437‑M2/26‑50 (MQ=255) gctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt > 1:1103982‑M2/25‑50 (MQ=255) gctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt > 1:4577621‑M2/25‑50 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt < 1:7787793‑M2/26‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg > 1:3515774‑M2/24‑50 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 1:8181322‑M2/23‑50 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 1:6821826‑M2/23‑50 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 1:6540933‑M2/23‑50 (MQ=255) aagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt > 1:1376969‑M2/22‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt > 1:2900457‑M2/21‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt > 1:3111086‑M2/21‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt > 1:2264495‑M2/21‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt < 1:634647‑M2/30‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt < 1:6431206‑M2/29‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:4702036‑M2/31‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt > 1:881132‑M2/20‑50 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt > 1:5700102‑M2/20‑50 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt < 1:2843194‑M2/32‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttttt < 1:371715‑M2/33‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttttt < 1:3173238‑M2/33‑1 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa < 1:5431816‑M2/34‑1 (MQ=255) atcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg > 1:2536639‑M2/15‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc < 1:5160739‑M2/35‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc < 1:7154977‑M2/35‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt < 1:3924393‑M2/37‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:2308362‑M2/14‑50 (MQ=255) cagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:4159869‑M2/13‑49 (MQ=255) cagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:4050768‑M2/13‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg > 1:6618351‑M2/12‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:5307807‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:1052024‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:7585576‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGa < 1:5731376‑M2/39‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa < 1:7422270‑M2/40‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa > 1:3846328‑M2/11‑50 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:6362826‑M2/10‑50 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:1287506‑M2/9‑49 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:822124‑M2/7‑47 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:3796195‑M2/43‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:7647292‑M2/43‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:2752240‑M2/43‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 1:180620‑M2/45‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 1:3733951‑M2/45‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgag > 1:6879944‑M2/6‑49 (MQ=255) tcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 1:5309295‑M2/5‑50 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 1:696464‑M2/4‑49 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 1:5115506‑M2/47‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 1:2477264‑M2/47‑1 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa > 1:7391508‑M2/2‑50 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat > 1:852910/1‑50 (MQ=255) | GATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223044‑1223142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |