| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 729,365 | Δ9,598 bp | rhsC–ybfD | rhsC, ybfB, ybfO, ybfC, ybfQ, ybfL, ybfD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 729365 | 738962 | 9598 | 148 [0] | [0] 149 | rhsC–ybfD | rhsC,ybfB,ybfO,ybfC,ybfQ,ybfL,ybfD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 729364 | 0 (0.000) | 140 (1.340) | 71/94 | 0.0 | 100% | intergenic (+24/‑219) | ybfA/rhsC | DUF2517 domain‑containing protein YbfA/rhs element protein RhsC |
| ? | NC_000913 | 738963 = | 0 (0.000) | intergenic (+110/‑38) | ybfD/ybgA | H repeat‑associated putative transposase YbfD/DUF1722 domain‑containing protein YbgA | |||||
Only 100 of 148 total aligned reads displayed.
AAAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAAACCGCCAGCGGAAACGCTGGCGGTTTTTTGTATCAGGAAGATGTTCAG > NC_000913/729315‑729413 | aaaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAA < 1:1038876‑M1/50‑1 (MQ=255)aaaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAA < 1:4972947‑M1/50‑1 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc > 1:1146044‑M1/1‑49 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 1:6270778‑M1/50‑2 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc > 1:2888281‑M1/1‑49 (MQ=255) aaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcg < 1:1539328‑M1/50‑3 (MQ=255) aGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgt > 1:2261644‑M1/1‑47 (MQ=255) ggCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtc > 1:6843737‑M1/1‑46 (MQ=255) ggCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtc < 1:1844015‑M1/50‑5 (MQ=255) ggCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtc > 1:5603401‑M1/1‑46 (MQ=255) gCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtct < 1:370947‑M1/50‑6 (MQ=255) gCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtct < 1:2451716‑M1/50‑6 (MQ=255) gCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtc > 1:5978207‑M1/1‑45 (MQ=255) gCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtc > 1:2111504‑M1/1‑45 (MQ=255) cAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:94352‑M1/1‑44 (MQ=255) aaCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:1286620‑M1/1‑43 (MQ=255) aaCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:411954‑M1/1‑43 (MQ=255) aCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctaca > 1:7694484‑M1/1‑42 (MQ=255) aCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctaca < 1:304783‑M1/50‑9 (MQ=255) aCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctaca > 1:143846‑M1/1‑42 (MQ=255) cTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacac < 1:2686352‑M1/50‑10 (MQ=255) cTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacac < 1:7648232‑M1/50‑10 (MQ=255) cTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacac < 1:3014657‑M1/50‑10 (MQ=255) tGGTGTTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact > 1:6854600‑M1/1‑40 (MQ=255) tGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact > 1:4225585‑M1/1‑40 (MQ=255) tGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact > 1:1635419‑M1/1‑40 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactta < 1:2529462‑M1/50‑13 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactta > 1:2848789‑M1/1‑38 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactt < 1:4355088‑M1/49‑12 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact < 1:6974032‑M1/48‑11 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac < 1:6235633‑M1/50‑14 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac > 1:7648672‑M1/1‑37 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac > 1:5103501‑M1/1‑37 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac < 1:3374252‑M1/50‑14 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac < 1:7926328‑M1/50‑14 (MQ=255) gATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttact > 1:5529541‑M1/1‑36 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactc < 1:3606916‑M1/50‑16 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactc > 1:3715560‑M1/1‑35 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttact < 1:224892‑M1/49‑15 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttact < 1:7992717‑M1/49‑15 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcc < 1:5726430‑M1/50‑17 (MQ=255) ttttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcct > 1:4954123‑M1/1‑33 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 1:3529798‑M1/1‑32 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcct < 1:2338903‑M1/49‑18 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 1:2925177‑M1/1‑31 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 1:3900018‑M1/1‑31 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg < 1:7353133‑M1/49‑19 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctgt < 1:347074‑M1/49‑20 (MQ=255) attgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgta > 1:5282294‑M1/1‑29 (MQ=255) attgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgta < 1:5051387‑M1/49‑21 (MQ=255) attgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgta < 1:4039648‑M1/49‑21 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaa < 1:1432247‑M1/50‑23 (MQ=255) tgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaac > 1:6762114‑M1/1‑27 (MQ=255) tgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaac > 1:1848880‑M1/1‑27 (MQ=255) gattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaac < 1:7170024‑M1/49‑24 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaacc < 1:483442‑M1/49‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaacc < 1:7466766‑M1/49‑25 (MQ=255) ttgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgc > 1:2528514‑M1/1‑24 (MQ=255) tgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:7685745‑M1/1‑23 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct < 1:2730794‑M1/49‑28 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctca < 1:6670892‑M1/50‑30 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:3141442‑M1/1‑21 (MQ=255) tGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 1:6408803‑M1/1‑20 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagga < 1:7258926‑M1/50‑33 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagga < 1:7156089‑M1/50‑33 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagg < 1:7485016‑M1/49‑32 (MQ=255) gTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag < 1:809454‑M1/50‑34 (MQ=255) gTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:67575‑M1/1‑17 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:939091‑M1/1‑16 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:2572429‑M1/1‑16 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:5762157‑M1/1‑16 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:6127289‑M1/1‑15 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:7583325‑M1/1‑15 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:2052839‑M1/1‑15 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagca < 1:4976053‑M1/49‑36 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:7794290‑M1/1‑13 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:4216339‑M1/1‑13 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:1997641‑M1/1‑13 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:2864108‑M1/1‑13 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagt > 1:4423880‑M1/1‑12 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa < 1:7993685‑M1/50‑40 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa < 1:8098780‑M1/50‑40 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagta < 1:7953204‑M1/49‑39 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagta < 1:3408439‑M1/49‑39 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaat > 1:213639‑M1/1‑10 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaat > 1:5426739‑M1/1‑10 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaat > 1:3105613‑M1/1‑10 (MQ=255) tACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatg < 1:3308244‑M1/50‑42 (MQ=255) aCATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatg > 1:7569259‑M1/1‑8 (MQ=255) aCATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatg > 1:7786771‑M1/1‑8 (MQ=255) cATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatga < 1:6388670‑M1/49‑43 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatc < 1:4718674‑M1/50‑46 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatc > 1:7417154‑M1/1‑5 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatc < 1:293192‑M1/50‑46 (MQ=255) gAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatct < 1:7308314‑M1/49‑47 (MQ=255) gAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatct < 1:6584565‑M1/49‑47 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctaca < 1:2537424‑M1/50‑50 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctaca < 1:3962660‑M1/50‑50 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctac > 1:5834208‑M1/1‑1 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctac > 1:6153287‑M1/1‑1 (MQ=255) | AAAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAAACCGCCAGCGGAAACGCTGGCGGTTTTTTGTATCAGGAAGATGTTCAG > NC_000913/729315‑729413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |