mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 39 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 770,897 | 0 | T | G | 41.8% | 153.7 / 30.1 | 98 | intergenic (+286/‑561) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I |
| * | NC_000913 | 4,331,790 | 0 | T | G | 36.8% | 133.1 / 30.9 | 68 | V430G (GTT→GGT) | proP | osmolyte:H(+) symporter ProP |
| * | NC_000913 | 624,589 | 0 | T | C | 34.8% | 184.4 / 158.5 | 141 | intergenic (‑79/‑296) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC |
| * | NC_000913 | 888,014 | 0 | T | G | 34.7% | 164.5 / 14.3 | 75 | noncoding (44/81 nt) | rybB | small regulatory RNA RybB |
| * | NC_000913 | 2,676,106 | 0 | C | A | 32.4% | 84.1 / 10.4 | 37 | L240F (TTG→TTT) | yphD | putative ABC transporter membrane subunit YphD |
| * | NC_000913 | 1,669,508 | 0 | T | A | 30.6% | 145.4 / 18.2 | 62 | I29F (ATT→TTT) | ynfL | putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 3,275,611 | 0 | A | C | 30.5% | 244.9 / 24.2 | 106 | E110D (GAA→GAC) | garD | galactarate dehydratase |
| * | NC_000913 | 3,350,853 | 0 | A | C | 29.7% | 232.8 / 13.4 | 91 | S725A (TCA→GCA) | arcB | sensory histidine kinase ArcB |
| * | NC_000913 | 4,223,597 | 0 | C | T | 29.5% | 176.3 / 39.0 | 88 | R11K (AGA→AAA) | iclR | DNA‑binding transcriptional repressor IclR |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.3% | 320.5 / 196.4 | 201 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,775,467 | 0 | A | C | 27.9% | 244.9 / 13.6 | 111 | intergenic (+23/‑120) | aroD/ydiF | 3‑dehydroquinate dehydratase/putative acetate‑CoA transferase |
| * | NC_000913 | 589,930 | 0 | A | G | 27.0% | 171.9 / 19.4 | 74 | L342P (CTC→CCC) | nfrA | bacteriophage N4 receptor, outer membrane protein |
| * | NC_000913 | 1,491,103 | 0 | A | C | 27.0% | 266.7 / 10.4 | 100 | T68P (ACC→CCC) | cybB | cytochrome b561 |
| * | NC_000913 | 213,341 | 0 | A | G | 27.0% | 151.6 / 13.5 | 63 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 4,457,105 | 0 | A | G | 26.4% | 201.6 / 22.5 | 87 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 1,684,749 | 0 | A | C | 25.6% | 206.5 / 13.7 | 78 | D164A (GAC→GCC) | tus | DNA replication terminus site‑binding protein |
| * | NC_000913 | 941,713 | 0 | T | G | 25.6% | 226.2 / 12.8 | 86 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| * | NC_000913 | 2,867,244 | 0 | A | T | 24.3% | 165.5 / 21.1 | 74 | V103E (GTA→GAA) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| * | NC_000913 | 1,015,516 | 0 | G | T | 23.8% | 254.2 / 38.5 | 109 | intergenic (+57/‑199) | pqiC/rmf | intermembrane transport lipoprotein PqiC/ribosome modulation factor |
| * | NC_000913 | 2,029,274 | 0 | C | T | 23.3% | 129.1 / 17.2 | 60 | K31K (AAG→AAA) | yedI | conserved inner membrane protein YedI |