| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 135 [0] | [0] 136 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 120 (1.240) | 64/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 149 total aligned reads displayed.
CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565001‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCA > NC_000913/586109‑586157 CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT < 1:3847147/50‑1 TGATTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC > 1:8306894/1‑50 TGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC > 1:6856482/1‑50 TGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC > 1:5360371/1‑50 GAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT > 1:4806643/1‑50 GAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT > 1:1836602/1‑50 GAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT > 1:2140894/1‑50 AATCAGCGAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTT < 1:4418961/50‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT < 1:6379446/49‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT < 1:6531524/49‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC < 1:2008727/48‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGCCATGGAAACGGAAATCTT > 1:6660553/1‑50 ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:2754867/1‑50 CAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT > 1:1776222/1‑50 AGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT > 1:202780/1‑49 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT > 1:3348392/1‑50 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT > 1:7092177/1‑50 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT < 1:6165957/50‑1 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:135585/1‑49 GCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTA < 1:632213/50‑1 GCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTA < 1:5331354/50‑1 CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTAT > 1:388375/1‑50 TTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATG > 1:685879/1‑50 TGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGC > 1:476089/1‑50 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC > 1:2914984/1‑50 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGC < 1:6620950/49‑1 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGC < 1:7401120/49‑1 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC > 1:1477738/1‑50 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCG > 1:3004812/1‑50 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCG < 1:423925/50‑1 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGT > 1:613664/1‑50 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGT > 1:2354113/1‑50 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGT > 1:4682029/1‑50 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC > 1:7509001/1‑50 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC > 1:3515326/1‑50 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC > 1:221447/1‑50 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC > 1:5584481/1‑50 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC < 1:470716/50‑1 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT > 1:1907664/1‑49 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA > 1:6763299/1‑50 GTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT > 1:3038432/1‑50 GTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT > 1:432956/1‑50 GTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT > 1:2963292/1‑50 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATC < 1:5647608/50‑1 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT < 1:1433531/49‑1 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT < 1:3790661/49‑1 GTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC > 1:5099124/1‑50 TCTGAGGTCATGGCAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG < 1:2578777/50‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG > 1:7727266/1‑50 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC < 1:1735006/49‑1 CTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT > 1:3510659/1‑50 CTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT > 1:5179207/1‑50 CTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT > 1:924016/1‑50 TGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTT > 1:2662723/1‑50 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT < 1:7697868/49‑1 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT < 1:6016042/49‑1 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTT < 1:5908367/48‑1 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG > 1:5900147/1‑50 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG < 1:7147406/50‑1 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG > 1:765707/1‑50 TCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC < 1:5007609/50‑1 TCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC > 1:2744129/1‑50 TCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC < 1:1062139/50‑1 CATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCT > 1:6691361/1‑50 CATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCT > 1:1373467/1‑50 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:1181015/50‑1 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT > 1:5165536/1‑50 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:257815/50‑1 GGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG > 1:3757407/1‑50 GGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG > 1:3817562/1‑50 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG < 1:4612072/49‑1 AAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCC > 1:7361016/1‑50 AAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCC > 1:8133929/1‑50 AAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCC < 1:4192188/50‑1 AAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCC < 1:6781366/50‑1 CGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:3034380/1‑50 CGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT < 1:2664128/50‑1 CGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT < 1:5311708/50‑1 CGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT < 1:2382780/50‑1 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTC < 1:621323/50‑1 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA < 1:7008959/50‑1 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA > 1:2821640/1‑50 AAATCTTCCTTATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:5042799/1‑50 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:7773200/1‑50 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:7864886/1‑50 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:7627278/1‑50 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC < 1:5355781/50‑1 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC < 1:3254815/50‑1 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC < 1:4712487/50‑1 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:5016338/1‑50 ATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA > 1:7011976/1‑50 ATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA < 1:5083677/50‑1 TCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA > 1:7634399/1‑49 TCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA > 1:8051590/1‑49 CTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACA > 1:8008550/1‑50 CTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACA > 1:8127196/1‑50 TTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > 1:1293753/1‑50 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCA > 1:6278242/1‑50 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT < 1:6000160/48‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACA < 1:4011966/47‑1 CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565001‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCA > NC_000913/586109‑586157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |