| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 135 [0] | [0] 136 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 120 (1.240) | 64/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 135 total aligned reads displayed.
ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 | aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:2754867‑M1/1‑50 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 1:4289176‑M1/50‑2 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat < 1:6308178‑M1/50‑6 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat > 1:3348392‑M1/1‑45 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat < 1:6165957‑M1/50‑6 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat > 1:6207369‑M1/1‑45 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat > 1:7092177‑M1/1‑45 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt < 1:2941338‑M1/50‑7 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:2469615‑M1/1‑44 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 1:1950533‑M1/50‑8 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:135585‑M1/1‑43 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta < 1:632213‑M1/50‑9 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta > 1:7428844‑M1/1‑42 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 1:2230389‑M1/1‑41 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 1:3805801‑M1/1‑41 (MQ=255) tGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc > 1:476089‑M1/1‑39 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc > 1:2914984‑M1/1‑38 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc < 1:7401120‑M1/49‑12 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc < 1:6620950‑M1/49‑12 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc > 1:1477738‑M1/1‑37 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:3874072‑M1/50‑15 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:423925‑M1/50‑15 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt > 1:4682029‑M1/1‑35 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt > 1:613664‑M1/1‑35 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt > 1:2354113‑M1/1‑35 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:221447‑M1/1‑34 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:5584481‑M1/1‑34 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:3515326‑M1/1‑34 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:1907664‑M1/1‑32 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:8262288‑M1/1‑32 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta > 1:6763299‑M1/1‑31 (MQ=255) gtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat > 1:432956‑M1/1‑30 (MQ=255) gtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat > 1:2963292‑M1/1‑30 (MQ=255) gtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat > 1:3038432‑M1/1‑30 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatc < 1:5647608‑M1/50‑22 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:6932430‑M1/49‑21 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:78942‑M1/49‑21 (MQ=255) gtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc > 1:5099124‑M1/1‑28 (MQ=255) tCTGAGGTCATGGCAACGGAAATCTTCctcatttatgcccgtcttatccg < 1:2578777‑M1/50‑24 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:1688917‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:7727266‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:3397372‑M1/49‑23 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:1735006‑M1/49‑23 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 1:5179207‑M1/1‑26 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 1:924016‑M1/1‑26 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 1:5331670‑M1/1‑26 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 1:36047‑M1/1‑26 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:2662723‑M1/1‑25 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 1:7697868‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt < 1:5908367‑M1/48‑26 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt < 1:5234475‑M1/48‑26 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:705611‑M1/50‑29 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg < 1:7147406‑M1/50‑30 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc < 1:5007609‑M1/50‑31 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc > 1:2744129‑M1/1‑20 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc < 1:1062139‑M1/50‑31 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:6642371‑M1/1‑19 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:6691361‑M1/1‑19 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:1373467‑M1/1‑19 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt > 1:5986035‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:2784634‑M1/49‑32 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:7687421‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:1181015‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:257815‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:3019202‑M1/50‑34 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg > 1:3757407‑M1/1‑16 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg > 1:3817562‑M1/1‑16 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:1832141‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg < 1:4612072‑M1/49‑35 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc > 1:7361016‑M1/1‑14 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc < 1:6781366‑M1/50‑37 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc > 1:4703232‑M1/1‑13 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct < 1:5165019‑M1/50‑39 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:3034380‑M1/1‑11 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt < 1:6805666‑M1/50‑40 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt < 1:2664128‑M1/50‑40 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt < 1:5311708‑M1/50‑40 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctatgccctt > 1:4079236‑M1/1‑11 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca < 1:7008959‑M1/50‑42 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca < 1:8071727‑M1/50‑42 (MQ=255) aaaTCTTCcttatttatgcccgtcttatccgtttccgctttgcccttcac > 1:5042799‑M1/1‑8 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:7773200‑M1/1‑8 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:7627278‑M1/1‑8 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:7864886‑M1/1‑8 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac < 1:5355781‑M1/50‑43 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac < 1:3254815‑M1/50‑43 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac < 1:4712487‑M1/50‑43 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:5016338‑M1/1‑8 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca < 1:7631671‑M1/50‑45 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca < 1:5083677‑M1/50‑45 (MQ=255) tCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:7634399‑M1/1‑5 (MQ=255) tCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:8051590‑M1/1‑5 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 1:8127196‑M1/1‑4 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:1293753‑M1/1‑3 (MQ=255) tCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:4720459‑M1/1‑2 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:6278242‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 1:1426883‑M1/49‑49 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 1:6000160‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 1:5867334‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 1:4011966‑M1/47‑47 (MQ=255) | ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |