| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 135 [0] | [0] 136 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 120 (1.240) | 64/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 136 total aligned reads displayed.
CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586060‑586158 | tcagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcc < 1:926296‑M2/1‑1 (MQ=255)tcagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcc < 1:4289176‑M2/1‑1 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt > 1:3348392‑M2/46‑50 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt > 1:6207369‑M2/46‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:2469615‑M2/45‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt < 1:2941338‑M2/6‑1 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAttt < 1:1950533‑M2/7‑1 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:135585‑M2/44‑49 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa < 1:5331354‑M2/8‑1 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa < 1:632213‑M2/8‑1 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa > 1:7428844‑M2/43‑50 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt > 1:3805801‑M2/42‑50 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt > 1:2230389‑M2/42‑50 (MQ=255) ttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATg > 1:685879‑M2/41‑50 (MQ=255) tgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc > 1:6445289‑M2/40‑50 (MQ=255) tgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc > 1:476089‑M2/40‑50 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc < 1:6620950‑M2/11‑1 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc < 1:735210‑M2/11‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGccc > 1:1477738‑M2/38‑50 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg < 1:423925‑M2/14‑1 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg < 1:3874072‑M2/14‑1 (MQ=255) caggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGt > 1:4682029‑M2/36‑50 (MQ=255) caggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGt > 1:613664‑M2/36‑50 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:7509001‑M2/35‑50 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:221447‑M2/35‑50 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:3515326‑M2/35‑50 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:5584481‑M2/35‑50 (MQ=255) ggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt > 1:6709739‑M2/34‑50 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt > 1:1907664‑M2/33‑49 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa > 1:7743195‑M2/32‑50 (MQ=255) gtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt > 1:2963292‑M2/31‑50 (MQ=255) gtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt > 1:3038432‑M2/31‑50 (MQ=255) gtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt > 1:432956‑M2/31‑50 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 1:78942‑M2/20‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATc < 1:5647608‑M2/21‑1 (MQ=255) gtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc > 1:5099124‑M2/29‑50 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc < 1:3397372‑M2/22‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc < 1:1735006‑M2/22‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCg > 1:1688917‑M2/28‑50 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCg > 1:7727266‑M2/28‑50 (MQ=255) ctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGt > 1:5179207‑M2/27‑50 (MQ=255) ctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGt > 1:36047‑M2/27‑50 (MQ=255) ctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGt > 1:5331670‑M2/27‑50 (MQ=255) ctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGt > 1:924016‑M2/27‑50 (MQ=255) tgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt > 1:5454248‑M2/26‑50 (MQ=255) tgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt > 1:2662723‑M2/26‑50 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt < 1:7697868‑M2/26‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt < 1:6016042‑M2/26‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt < 1:5234475‑M2/25‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt < 1:5908367‑M2/25‑1 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc < 1:705611‑M2/28‑1 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg > 1:765707‑M2/22‑50 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg < 1:7147406‑M2/29‑1 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg > 1:5900147‑M2/22‑50 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc < 1:1062139‑M2/30‑1 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc < 1:5007609‑M2/30‑1 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc > 1:2744129‑M2/21‑50 (MQ=255) catggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt > 1:1373467‑M2/20‑50 (MQ=255) catggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt > 1:6691361‑M2/20‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt < 1:2784634‑M2/31‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:1181015‑M2/33‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt > 1:5165536‑M2/18‑50 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:257815‑M2/33‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:3019202‑M2/33‑1 (MQ=255) ggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTg > 1:3757407‑M2/17‑50 (MQ=255) ggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTg > 1:3817562‑M2/17‑50 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTg < 1:4612072‑M2/34‑1 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:1832141‑M2/16‑50 (MQ=255) aaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGcc > 1:7361016‑M2/15‑50 (MQ=255) aaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGcc < 1:6781366‑M2/36‑1 (MQ=255) aaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGcc > 1:8133929‑M2/15‑50 (MQ=255) aacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGccc > 1:4703232‑M2/14‑50 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt < 1:2382780‑M2/39‑1 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt < 1:6805666‑M2/39‑1 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt < 1:2664128‑M2/39‑1 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:3034380‑M2/12‑50 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTATGCCCtt > 1:4079236‑M2/12‑50 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTc < 1:621323‑M2/40‑1 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca < 1:7008959‑M2/41‑1 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca > 1:2821640‑M2/10‑50 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca < 1:8071727‑M2/41‑1 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:7864886‑M2/9‑50 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:7627278‑M2/9‑50 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac < 1:5355781‑M2/42‑1 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac < 1:3254815‑M2/42‑1 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac < 1:4712487‑M2/42‑1 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:5016338‑M2/9‑50 (MQ=255) atcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca > 1:7011976‑M2/7‑50 (MQ=255) atcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca > 1:5054024‑M2/7‑50 (MQ=255) atcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca < 1:5083677‑M2/44‑1 (MQ=255) tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca > 1:7634399‑M2/6‑49 (MQ=255) cttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca > 1:8008550‑M2/5‑50 (MQ=255) cttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca > 1:8127196‑M2/5‑50 (MQ=255) ttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:1293753‑M2/4‑50 (MQ=255) ttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:2599906‑M2/4‑50 (MQ=255) tcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:4720459‑M2/3‑49 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca < 1:4011966‑M2/46‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt < 1:6000160‑M2/47‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATc < 1:1426883‑M2/48‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 1:6278242‑M2/2‑50 (MQ=255) | CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586060‑586158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |